XLOC_000305


Basic Information

Item Value
gene id XLOC_000305
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25550053 ~ 25553299 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003073
gttcattgcgatcccaaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaataaagacgatttgttgataaagcatgtactgtaaactagcgacgttatccaattacatcaagttcatttattaaaaacatatttttctcaaatataacgttggtcatgcatagctcagaacaatatatacattttaagatgaggaacagtgttaccagattgttgttttccacaatagaattcgtgcaaaatctttatatgatatgcaatatgcaactctaataacacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaaggttaattgtaaaaacaattattttccatgcctttaaAGGAAAAAAGCCAGAAATTTTGCCCGTCTGagcacattttaaattaaatttaatttttattttaatctaccacacacacacatatgtatgtatatatatatatatatatatatacatacaggtgTAAATTATAAGGTGTTCACTGTtcagatatgaatattttttcttttctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaAAAAGTAAAGCCACTTTACCCATGTCTATATGTTAAATTGAACTTGtctttctctctatctctgtgttaacacatttgtatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCATATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTATAGAGGGATAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTCCATGTATACTAAATATCTACATTGTTTAGGCATATATGATTGTAtgagataaaatgcatttattcttttacttctattgtaataacagaaagaaacgcattagttttactattactattgtttatgaaaaacattataaACTACAGTATAAGCTCAAAAAATATTGTGGCctaactgtttaaaactatttgttctgggtgttgattagtggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgaCACCTTATAGGCCATCAACTGTCCACATTGGGGTTTAGGAAATTAAACTACTAATGCTGCTTGTCTACTAGTCTTAGGATAAGTTagaattgttataaatgttaatttctttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTTGGTGTGTACTTTAATGTTTCCATTAGTCACTGTATCTGTAGATCTAGGTGACAGTGGGCTAGAgtcaaaatttgtttttatttaaactaaggcatactgatggccttttttatctcagatttggtcatgcaagtataaatatatcctaaaatatttttatattctttccattggtggaaaagagtttggtataattatttttaatagactGCCAAGTtctcagcagacatttttcttaGATATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTTATCTGTCTTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATGTGAACCATAAGTATAACTATTTCATGAATGCACAaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagctctttGATGTTCACCTAGTAAAATTAGATTAGAAGATAATATTTTGAAGGTTTGTTTACAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATAAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAAGCACATGAGTTTAAATCTGAGATAGATGAACTATATGATAATCTTAAACTGATCTACAGGTAAATGCCAAAACTTATTGGTTtacttatttgcttgtttgtttgtttgtttgttttttttatatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGTCTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTACTGGAATTAGCAGATATTCAACAGTTTGGCCATCTTGCTGACCTATTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGCCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGactcTGCTGACCCAGCAACAAAGAGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTGAGGAGAAGCAGAGGATTCTTGTGGCAGAGATGGccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaagtatgtatttgtattatttggcacagacataagcataaggttacccagtccaaaggatattaatatatttttatgttgttgtgttcttttaagattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttgg
>TCONS_00002836
tttagatttctttaaaaatccaattttgttttctaataagcaAAAAGTAAAGCCACTTTACCCATGTCTATATGTTAAATTGAACTTGtctttctctctatctctgtgttaacacatttgtatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCATATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTATAGAGGGATAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGTCTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTACTGGAATTAGCAGATATTCAACAGTTTGGCCATCTTGCTGACCTATTGATATCAGAAGGTAACGATATCCAGTAGAATTTGTTTTAGTTGTTCAGTAACCTATTTAAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGCCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtaagtgttactattattgtcatttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactcTGCTGACCCAGCAACAAAGAGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTGAGGAGAAGCAGAGGATTCTTGTGGCAGAGATGGccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatatattttttaaataaagctccagctgatgagtttgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaatcaaattttca
>TCONS_00002838
cattttttttctttttcagaaagtattttgttttgtctgattttatgaCACCTTATAGGCCATCAACTGTCCACATTGGGGTTTAGGAAATTAAACTACTAATGCTGCTTGTCTACTAGTCTTAGGATAAGTTagaattgttataaatgttaatttctttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTTGGTGAAATGGAGTGAGGCATACCAGGATATGTCTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTACTGGAATTAGCAGATATTCAACAGTTTGGCCATCTTGCTGACCTATTGATATCAGAAGGTAACGATATCCAGTAGAATTTGTTTTAGTTGTTCAGTAACCTATTTAAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGCCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactcTGCTGACCCAGCAACAAAGAGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTGAGGAGAAGCAGAGGATTCTTGTGGCAGAGATGGccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatatattttttaaataaagctccagctgatgagtttgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaatcaaattttca
>TCONS_00002837
cattttttttctttttcagaaagtattttgttttgtctgattttatgaCACCTTATAGGCCATCAACTGTCCACATTGGGGTTTAGGAAATTAAACTACTAATGCTGCTTGTCTACTAGTCTTAGGATAAGTTagaattgttataaatgttaatttctttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTTGGTGAAATGGAGTGAGGCATACCAGGATATGTCTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTACTGGAATTAGCAGATATTCAACAGTTTGGCCATCTTGCTGACCTATTGATATCAGAAGGTAACGATATCCAGTAGAATTTGTTTTAGTTGTTCAGTAACCTATTTAAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGCCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtaagtgttactattattgtcatttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactcTGCTGACCCAGCAACAAAGAGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTGAGGAGAAGCAGAGGATTCTTGTGGCAGAGATGGccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaaattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatatattttttaaataaagctccagctgatgagtttgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaatcaaattttca

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003073 False 2840 lncRNA 0.34 4 25550053 25553145
TCONS_00002836 False 1365 lncRNA 0.37 3 25550612 25553299
TCONS_00002838 False 1223 lncRNA 0.38 4 25551151 25553299
TCONS_00002837 True 1298 lncRNA 0.37 3 25551151 25553299

Neighbor

gene id symbol gene type direction distance location
XLOC_000304 NA coding upstream 107352 25440037 ~ 25442701 (+)
XLOC_000303 tmem131l coding upstream 233904 25218177 ~ 25316149 (+)
XLOC_000302 mnd1 coding upstream 333818 25178106 ~ 25216235 (+)
XLOC_000301 BX005016.1 coding upstream 429848 25120089 ~ 25120205 (+)
XLOC_000300 NA coding upstream 950065 24596326 ~ 24599988 (+)
XLOC_000306 plrg1 coding downstream 97618 25650917 ~ 25666604 (+)
XLOC_000307 lrata coding downstream 143499 25696798 ~ 25698039 (+)
XLOC_000308 NA coding downstream 166354 25719653 ~ 25721702 (+)
XLOC_000309 npy2r coding downstream 179416 25732715 ~ 25733867 (+)
XLOC_000310 gucy1a1 coding downstream 230502 25783801 ~ 25799051 (+)
XLOC_000297 NA non-coding upstream 1086748 24462460 ~ 24463305 (+)
XLOC_000292 NA non-coding upstream 1186363 24361993 ~ 24363690 (+)
XLOC_000322 AL954695.2 non-coding downstream 997735 26551034 ~ 26554839 (+)
XLOC_000323 AL954695.3 non-coding downstream 1023989 26577288 ~ 26584593 (+)
XLOC_000325 NA non-coding downstream 1111390 26664689 ~ 26671210 (+)
XLOC_000327 NA non-coding downstream 1186816 26740115 ~ 26741149 (+)

Expression


Co-expression Network