XLOC_000307 (lrata)


Basic Information

Item Value
gene id XLOC_000307
gene name lrata
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25696798 ~ 25698039 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000502
GAAGTCTTCACTTACACAAAACACTAAAATGCTGGACTCGCTGACTTTTCTATTTGAGAAATTCTTTCTTTTCTCAAACTTTAACCTATTTAAAAGTATATGGCAGCCAGAGAAGGAGGAGTGTGCTGTGAAATGTCACCCAGCGCTCAGGAGAGGAGATCTGCTGGAGGTGCAGCGCACTCTCTTCATTCATTACGGCATTTATCTAGGCGAGAACAGAGTGGCTCACCTAATGCCCGACATCATGCCCCTGTTAACCAGCAACAAACAGCACATTAAACCAGTCGTCACGAACAAAAGACTCATTTTAGGCTGCATGTACAGACTCGCGAGTATACGCGTCGATTCGGTTGAAGATTTCGCGTACGGAGCTCCGATTCTGACCAACGACATGGACAAGAAAATGAAGTGTCAAGTACTGGCGAACGAGGAGGTCGCGAGGAGAGCAGAGAAACTGGTCGGCGACATACCGTACAGTTTATTGTGGAATAACTGCGAACATTTCGTGACGTACTGCAGGTACGGAACACCTGTGAGCGAGCAGACCGACAAGTTTTGTAATTGTCTGAAATCCATCATTCGGGACCAGAGAAGTGTGGCCTTAACTATCGGGATGGGAGTGATGTACATCCTTTGCTTTGGCTTGGCACCTtcaactacattacccacaattcTTATTCCCTTTATTTTGTGGATGGCTGGTTGAAAGACAACACTTTGAGTGGACAAACACTCAACaatgtgtctttcaaatgcatcGGTCCAACGGCTAAATTTCTGTAGCCTACACACGCTGTTTGAATATAGCCAAGCTATGATTGTACATGCATTCTGCCTGTATATTTGTTAAGCTCTTTCATTGAAACAATTAATGAAAACATTCTATTAACTCAAATTTGAGCCTTTACAggatgcttttaattttttaaaaccatattgTAGCTTGAAGTTACAGATTCCATGTACTACTCACTACATGTGCCTAATGTGTGTATTAAGCTGAAGTGTTAAACAGACGTGATGAATTTCACTGATCAAACTCATTGCATCATGAACTTtaatcatgcagaatatgtataATTGTaaatctttgtatttttattgttatggCCTGTTTGATTGTGATTTTGTAcagttgaaatatatatttaatacagtaA

Function

symbol description
lrata Predicted to enable phosphatidylcholine-retinol O-acyltransferase activity. Predicted to act upstream of or within retinol metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; liver; pleuroperitoneal region; and visual system. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 14 and retinitis pigmentosa. Orthologous to human LRAT (lecithin retinol acyltransferase).

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060720-1 Predicted to enable phosphatidylcholine-retinol O-acyltransferase activity. Predicted to act upstream of or within retinol metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; liver; pleuroperitoneal region; and visual system. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 14 and retinitis pigmentosa. Orthologous to human LRAT (lecithin retinol acyltransferase).

Ensembl:

ensembl_id ENSDARG00000037278

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000502 True 1160 mRNA 0.41 2 25696798 25698039

Neighbor

gene id symbol gene type direction distance location
XLOC_000306 plrg1 coding upstream 30194 25650917 ~ 25666604 (+)
XLOC_000305 NA coding upstream 143499 25550053 ~ 25553299 (+)
XLOC_000304 NA coding upstream 254097 25440037 ~ 25442701 (+)
XLOC_000303 tmem131l coding upstream 380649 25218177 ~ 25316149 (+)
XLOC_000302 mnd1 coding upstream 480563 25178106 ~ 25216235 (+)
XLOC_000308 NA coding downstream 21614 25719653 ~ 25721702 (+)
XLOC_000309 npy2r coding downstream 34676 25732715 ~ 25733867 (+)
XLOC_000310 gucy1a1 coding downstream 85762 25783801 ~ 25799051 (+)
XLOC_000311 gucy1b1 coding downstream 103609 25801648 ~ 25841659 (+)
XLOC_000312 fabp2 coding downstream 150192 25848231 ~ 25851575 (+)
XLOC_000301 BX005016.1 non-coding upstream 576593 25120089 ~ 25120205 (+)
XLOC_000300 NA non-coding upstream 1096810 24596326 ~ 24599988 (+)
XLOC_000297 NA non-coding upstream 1233493 24462460 ~ 24463305 (+)
XLOC_000322 AL954695.2 non-coding downstream 852995 26551034 ~ 26554839 (+)
XLOC_000323 AL954695.3 non-coding downstream 879249 26577288 ~ 26584593 (+)
XLOC_000325 NA non-coding downstream 966650 26664689 ~ 26671210 (+)
XLOC_000327 NA non-coding downstream 1042076 26740115 ~ 26741149 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_10387736_10392987 LRAT, LRATA coding CI01000300 null 10387176 ~ 10393042 (+)