XLOC_000312 (fabp2)


Basic Information

Item Value
gene id XLOC_000312
gene name fabp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25848231 ~ 25851575 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000509
TAGCTTTCAAACACTCTTCATAGTCCCTCAGTAGTTACTGCAACACAAGGCACTTACTAGTATAACAGACACACCCTACACAGTTTAAACAGCAAACAATTCAAACAAAAGCAGGACTTTGTTATGAGAACAACAGAGCGTGTATGTTTGACCATCGCAGTACAAGTGAGTGCTTGTTCTCAGGACTTGAAATCTCCGCTCTTTGCACAATCAATGAATAAGCAAGGCATGCTGGGATGTGTGTAACATATAGCCTGTTGGGCGGGTGAGATTTATACTTGGTGAGCTTTACTCGGCCACATCAGCATGAAGATAATACTCAGATAAGGCAACGCTTCGCCACTCGCACAGGTATAAAAGAGTGGCTCGGGGTAAAGTTAGGCCACTGTCAGGATCACACAACAGTCTGTCATCATCATGACCTTCAACGGGACCTGGAAAGTCGACCGCAATGAGAACTACGAGAAGTTCATGGAACAAATGGGCGTCAACATGGTGAAAAGGAAACTGGCTGCCCATGACAACCTGAAGATCACCCTGGAGCAGACCGGAGACAAGTTCAACGTGAAGGAAGTCAGCACTTTCCGCACACTGGAAATTAACTTTACTCTGGGCGTCACCTTTGACTATTCTCTGGCAGACGGCACTGAGCTCACAGGATCCTGGGTCATAGAGGGAGACACGCTCAAGGGGACTTTCACACGCAAGGACAACGGAAAGGTACTAACAACAGTCAGGACTATCGTTAATGGTGAACTTGTACAGAGCTATAGCTATGATGGAGTCGAGGCCAAGAGGATTTTCAAGAGGGCTTAAACTGTTATCTGCACTCCCAATGTCAAACTTACAACTGAAGTGGGACAATATGAAACTTTATAGTGTTTGAATATTTAACCTGAAAATAGCTTTAATGATTGGCAGCCCtaaagtttacaaaacatttatGTAAATCGTGTCATTTGCACTGTGAGTTTTGATATTTATGATAATAAAGCTATCTTAAGGCCCTTTTGTGAATGGATTTAATACGTGTCGTGATTCATGTTGGATAAATGTATTTTTCTGA
>TCONS_00000510
ACTGTCAGGATCACACAACAGTCTGTCATCATCATGACCTTCAACGGGACCTGGAAAGTCGACCGCAATGAGAACTACGAGAAGTTCATGGAACAAATGGGCGTCAACATGGTGAAAAGGAAACTGGCTGCCCATGACAACCTGAAGATCACCCTGGAGCAGACCGGAGACAAGTTCAACGTGAAGGAAGTCAGCACTTTCCGCACACTGGAAATTAACTTTACTCTGGGCGTCACCTTTGACTATTCTCTGGCAGACGGCACTGAGCTCACAGTAAGCACAGTCATTGCTGATTTCAGATGCATAAGCGTGGTTCCATAGTAAGCCCATAACATTCAATCTGCACAAAGGGTTCTTTATAGTGTGCTGACTGcacttttttttaagaatttttattttaaacattgttatacaaattgacaaaggtttaatttttcagtttagcaaaaaataaaaatagtaaattaaataaattaaaagaagtTAATACAAAAAACATCAAGAATAATATAGATTCAAAATAACTTAACACactttgagagaa

Function

symbol description
fabp2 Predicted to enable fatty acid binding activity. Acts upstream of or within response to lipid. Predicted to be located in cytoplasm. Is expressed in brain; digestive system; and kidney. Human ortholog(s) of this gene implicated in alcoholic liver cirrhosis; carotid stenosis; coronary artery disease; end stage renal disease; and obesity. Orthologous to human FABP2 (fatty acid binding protein 2).

GO:

id name namespace
GO:0033993 response to lipid biological_process
GO:0005504 fatty acid binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
ko03320 PPAR signaling pathway
ko04975 Fat digestion and absorption

ZFIN:

id description
ZDB-GENE-991019-5 Predicted to enable fatty acid binding activity. Acts upstream of or within response to lipid. Predicted to be located in cytoplasm. Is expressed in brain; digestive system; and kidney. Human ortholog(s) of this gene implicated in alcoholic liver cirrhosis; carotid stenosis; coronary artery disease; end stage renal disease; and obesity. Orthologous to human FABP2 (fatty acid binding protein 2).

Ensembl:

ensembl_id ENSDARG00000006427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000509 False 1066 mRNA 0.43 4 25848231 25851575
TCONS_00000510 True 544 lncRNA 0.38 2 25848615 25849235

Neighbor

gene id symbol gene type direction distance location
XLOC_000311 gucy1b1 coding upstream 6572 25801648 ~ 25841659 (+)
XLOC_000310 gucy1a1 coding upstream 49180 25783801 ~ 25799051 (+)
XLOC_000309 npy2r coding upstream 114364 25732715 ~ 25733867 (+)
XLOC_000308 NA coding upstream 126529 25719653 ~ 25721702 (+)
XLOC_000307 lrata coding upstream 150192 25696798 ~ 25698039 (+)
XLOC_000313 BX323448.1 coding downstream 161093 26012668 ~ 26045715 (+)
XLOC_000314 mxd4 coding downstream 220294 26071869 ~ 26096572 (+)
XLOC_000315 ndufb6 coding downstream 247675 26099250 ~ 26103232 (+)
XLOC_000316 toporsa coding downstream 253566 26105141 ~ 26109961 (+)
XLOC_000317 mtap coding downstream 259410 26110985 ~ 26127944 (+)
XLOC_000305 NA non-coding upstream 294932 25550053 ~ 25553299 (+)
XLOC_000304 NA non-coding upstream 405530 25440037 ~ 25442701 (+)
XLOC_000301 BX005016.1 non-coding upstream 728026 25120089 ~ 25120205 (+)
XLOC_000300 NA non-coding upstream 1248243 24596326 ~ 24599988 (+)
XLOC_000322 AL954695.2 non-coding downstream 699459 26551034 ~ 26554839 (+)
XLOC_000323 AL954695.3 non-coding downstream 725713 26577288 ~ 26584593 (+)
XLOC_000325 NA non-coding downstream 813114 26664689 ~ 26671210 (+)
XLOC_000327 NA non-coding downstream 888540 26740115 ~ 26741149 (+)
XLOC_000335 NA non-coding downstream 2620624 28472199 ~ 28473413 (+)

Expression


Co-expression Network