XLOC_000311 (gucy1b1)


Basic Information

Item Value
gene id XLOC_000311
gene name gucy1b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25801648 ~ 25841659 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000507
ACCAGCTGTGTGTACTTTTTGCATCCTCGCGCTCCCGTTGGCTACATCCTTTGTCAATAACATAGCGCTCGTTTCAGGAATGGTCGTTTCATCCGTAACAGCTGTACAGTTTGTCAGTGCTGGTGTTTAGTGATTTAATACATCAGAAACCGGGGATTGGCGAATTAATCGAAACATGTATGGTTTTGTGAACCACGCGTTGGAACTTCTGGTGTTGAGAAATTATGGTCCAGATGTGTGGGAGGACATTAAgagAGAGGCTCAGGTTGATGTAGAGGGACAGTTTCTGGTCAGAATTATCTATGAAGATGCCAAAACATATGACCTTGTGGCTGCTGCAAGCAAAGTTCTAAAAATGGATGCCGGTGGTATCTTGCAAATGTTTGGGAAAATGTTTTTTGAGTTCTGTCAGGAATCTGGGTACGACACCATCCTGCGAGTGTTGGGCTCCAATGTCCGTGAATTCTTACAAAATCTGGATGCATTACATGACCATCTGGGCACTATCTATCCTGGCATGCGTGCTCCCTCCTTCCGCTGCACGGATGCAGAGAAGGGGAACAACCTTATTCTCCACTATTACTCTGAGAGAGAGGGTCTTCAGGACATCGTCATAGGGATCATCAAGACGGTTGCACAGCAGATTCACGGAACTGAGATTGAGATGAAGGTCATTCAGCCGAAGAGCGAAGAATGTGATCACATTAAGTTCCTGATTGAGGAGAAGGACTCGGAGGAGGAGGCGTTTTATGAAGACTTGGATGGTTTTGAGGAGAATGGGACTCAAGAGACACGAATCAGTCCATACACCTTCTGCAAGGCTTTTCCCTTTCACCTGATGTTCGACAAGGACCTCATGCTAACACAGTGTGGCAACGCCATCTTCAGAGTCTTGCCACAGCTGCAGCCTGGCGTCTGTAACCTGTCCTCAGTGTTCTCTCTGGTTCGGCCGCACATAGACTTCAGTTTCCATGGCATCCTGTCTCACATCAACACTGTCTTTGTGCTGCGGAGTAAGGAGGGCCTGCTAAATGTAGAGACGGCGGAGAATGAAGATGAACTCACAGGAACAGAGATCAGCTGCCTTAGACTAAAGGGCCAAATGATCTCACTTCCTGAGACGGAGAACATCCTATTCCTGTGCTCGCCAAGTGTTATGAATCTGGATGACCTGACGAGGAGAGGGCTTTACCTGAGTGACATCCCTCTTCATGATGCCACCCGTGACCTTGTGTTACTTGGGGAGCAGTTTCGTGAGGAGTACAAGTTGACCCAGGAGCTGGAGATCTTGACAGACCGTCTGCAGCATACACTCCGAGCACTGGAAGatgagaagaagaagacagaCAGGTTGCTGTATTCTGTTCTGCCTCCGTCTGTAGCCAATGAACTGCGGCATAAGCGGCCTGTGCCTGCTAAACGATACGACAATGTGACCATTCTTTTTAGTGGCATTGTTGGCTTCAATGCATTCTGCAGCAAACATGCATCTGCAGAGGGAGCCATCAAAATCGTCAACCTTCTCAATGACATCTACACCAGATTTGACATTCTCACTGATTCTCGGAAGAATCCTTATGTGTATAAGGTGGAGACCGTTGGTGATAAATACATGACGGTGAGTGGTCTTCCAGAGCCCTGCACCCACCATGCAAAATCCATCTGTCATCTGGCCCTGGATATGATGGAGATCGCTGGACAGGTCAAAGTGGATGAGGATCCTGTGCAGATCACCATTGGAATTCACACAGGAGAGGTGGTCACAGGGGTCATAGGTCAAAGAATGCCCCGTTACTGCCTGTTTGGAAACACTGTCAATCTAACAAGTCGTACAGAGACCACTGGAGAGAAAGGAAAAATTAATGTGTCTGAATACACATACAGGTGTTTGCAGTCTGTGGAAAATGCTGATCCTCAATTTCATTTGGAGTACAGAGGACCTGTAACCATGAAAGGAAAGAAAGAGCCAATGAAAGTGTGGTTTCTCTCACGCAAGACTTAACAGACTCGCCGCACTGATGCAGTTTGTGTTGTGTTATCAGCTactgtgtttattataaattctaTGAATAGGAAAATGCTTTGCTTTCTACATCAAATTCAGCGTATTCTTCCCCTCTAA
>TCONS_00000508
GGAACAACCTTATTCTCCACTATTACTCTGAGAGAGAGGGTCTTCAGGACATCGTCATAGGGATCATCAAGACGGTTGCACAGCAGATTCACGGAACTGAGATTGAGATGAAGGTCATTCAGCCGAAGAGCGAAGAATGTGATCACATTAAGTTCCTGATTGAGGAGAAGGACTCGGAGGAGGAGGCGTTTTATGAAGACTTGGATGGTTTTGAGGAGAATGGGACTCAAGAGACACGAATCAGTCCATACACCTTCTGCAAGGCTTTTCCCTTTCACCTGATGTTCGACAAGGACCTCATGCTAACACAGTGTGGCAACGCCATCTTCAGAGTCTTGCCACAGCTGCAGCCTGGCGTCTGTAACCTGTCCTCAGTGTTCTCTCTGGTTCGGCCGCACATAGACTTCAGTTTCCATGGCATCCTGTCTCACATCAACACTGTCTTTGTGCTGCGGAGTAAGGTCTGTCTGCCCAAACCACATTACGTACCGTCTGATATCAAACCGCAAACTCTAATGTGTGGTTCATATACTGCTTTTTTGCCACTCTGAAAAATGTACTCCATTATTCCCCAGAAGCTTTCAATAGGGTTTGGGTCAGTTGGTAATTAATCATGTGTAAATATGAAGCCTTCTTTAATGATATGTCTCATAaatcttgtttttgtttaatatggAATATGGTTATATACAATATGGT

Function

symbol description
gucy1b1 Predicted to enable GTP binding activity; guanylate cyclase activity; and heme binding activity. Predicted to be involved in cGMP-mediated signaling and trans-synaptic signaling by nitric oxide, modulating synaptic transmission. Predicted to act upstream of or within cGMP biosynthetic process and intracellular signal transduction. Predicted to be located in cytoplasm. Predicted to be active in presynaptic active zone. Orthologous to human GUCY1B1 (guanylate cyclase 1 soluble subunit beta 1).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0019934 cGMP-mediated signaling biological_process
GO:0099555 trans-synaptic signaling by nitric oxide, modulating synaptic transmission biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0048786 presynaptic active zone cellular_component
GO:0016829 lyase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function
GO:0004383 guanylate cyclase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-160 Predicted to enable GTP binding activity; guanylate cyclase activity; and heme binding activity. Predicted to be involved in cGMP-mediated signaling and trans-synaptic signaling by nitric oxide, modulating synaptic transmission. Predicted to act upstream of or within cGMP biosynthetic process and intracellular signal transduction. Predicted to be located in cytoplasm. Predicted to be active in presynaptic active zone. Orthologous to human GUCY1B1 (guanylate cyclase 1 soluble subunit beta 1).

Ensembl:

ensembl_id ENSDARG00000086790

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000507 False 2122 mRNA 0.47 13 25801648 25841659
TCONS_00000508 True 699 lncRNA 0.44 3 25804642 25812959

Neighbor

gene id symbol gene type direction distance location
XLOC_000310 gucy1a1 coding upstream 2597 25783801 ~ 25799051 (+)
XLOC_000309 npy2r coding upstream 67781 25732715 ~ 25733867 (+)
XLOC_000308 NA coding upstream 79946 25719653 ~ 25721702 (+)
XLOC_000307 lrata coding upstream 103609 25696798 ~ 25698039 (+)
XLOC_000306 plrg1 coding upstream 135044 25650917 ~ 25666604 (+)
XLOC_000312 fabp2 coding downstream 6572 25848231 ~ 25851575 (+)
XLOC_000313 BX323448.1 coding downstream 171009 26012668 ~ 26045715 (+)
XLOC_000314 mxd4 coding downstream 230210 26071869 ~ 26096572 (+)
XLOC_000315 ndufb6 coding downstream 257591 26099250 ~ 26103232 (+)
XLOC_000316 toporsa coding downstream 263482 26105141 ~ 26109961 (+)
XLOC_000305 NA non-coding upstream 248349 25550053 ~ 25553299 (+)
XLOC_000304 NA non-coding upstream 358947 25440037 ~ 25442701 (+)
XLOC_000301 BX005016.1 non-coding upstream 681443 25120089 ~ 25120205 (+)
XLOC_000300 NA non-coding upstream 1201660 24596326 ~ 24599988 (+)
XLOC_000322 AL954695.2 non-coding downstream 709375 26551034 ~ 26554839 (+)
XLOC_000323 AL954695.3 non-coding downstream 735629 26577288 ~ 26584593 (+)
XLOC_000325 NA non-coding downstream 823030 26664689 ~ 26671210 (+)
XLOC_000327 NA non-coding downstream 898456 26740115 ~ 26741149 (+)
XLOC_000335 NA non-coding downstream 2630540 28472199 ~ 28473413 (+)

Expression


Co-expression Network