Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000508 |
| length | 699 |
| lncRNA type | retained_intron |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_000311 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 25801648 ~ 25841659 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0006182 | cGMP biosynthetic process | biological_process |
| GO:0019934 | cGMP-mediated signaling | biological_process |
| GO:0099555 | trans-synaptic signaling by nitric oxide, modulating synaptic transmission | biological_process |
| GO:0009190 | cyclic nucleotide biosynthetic process | biological_process |
| GO:0048786 | presynaptic active zone | cellular_component |
| GO:0016829 | lyase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016849 | phosphorus-oxygen lyase activity | molecular_function |
| GO:0004383 | guanylate cyclase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090313-160 | Predicted to enable GTP binding activity; guanylate cyclase activity; and heme binding activity. Predicted to be involved in cGMP-mediated signaling and trans-synaptic signaling by nitric oxide, modulating synaptic transmission. Predicted to act upstream of or within cGMP biosynthetic process and intracellular signal transduction. Predicted to be located in cytoplasm. Predicted to be active in presynaptic active zone. Orthologous to human GUCY1B1 (guanylate cyclase 1 soluble subunit beta 1). |
| ensembl_id | ENSDART00000132082 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000505 | lncRNA | upstream | 11929 | 25783801 ~ 25792713 (+) | False | XLOC_000310 |
| TCONS_00003074 | lncRNA | upstream | 82940 | 25719653 ~ 25721702 (+) | False | XLOC_000308 |
| TCONS_00000503 | lncRNA | upstream | 82940 | 25719653 ~ 25721702 (+) | True | XLOC_000308 |
| TCONS_00002836 | lncRNA | upstream | 251343 | 25550612 ~ 25553299 (+) | False | XLOC_000305 |
| TCONS_00000510 | lncRNA | downstream | 35656 | 25848615 ~ 25849235 (+) | True | XLOC_000312 |
| TCONS_00000514 | lncRNA | downstream | 286334 | 26099293 ~ 26101025 (+) | True | XLOC_000315 |
| TCONS_00000525 | lncRNA | downstream | 654112 | 26467071 ~ 26473854 (+) | False | XLOC_000321 |
| TCONS_00000530 | lncRNA | downstream | 654294 | 26467253 ~ 26474380 (+) | False | XLOC_000321 |
| TCONS_00000532 | lncRNA | downstream | 682682 | 26495641 ~ 26496930 (+) | True | XLOC_000321 |
| TCONS_00000506 | mRNA | upstream | 5591 | 25783801 ~ 25799051 (+) | True | XLOC_000310 |
| TCONS_00000504 | mRNA | upstream | 70775 | 25732715 ~ 25733867 (+) | True | XLOC_000309 |
| TCONS_00000502 | mRNA | upstream | 106603 | 25696798 ~ 25698039 (+) | True | XLOC_000307 |
| TCONS_00000501 | mRNA | upstream | 138038 | 25650917 ~ 25666604 (+) | True | XLOC_000306 |
| TCONS_00000498 | mRNA | upstream | 488493 | 25218177 ~ 25316149 (+) | False | XLOC_000303 |
| TCONS_00000509 | mRNA | downstream | 35272 | 25848231 ~ 25851575 (+) | False | XLOC_000312 |
| TCONS_00000511 | mRNA | downstream | 199709 | 26012668 ~ 26045715 (+) | True | XLOC_000313 |
| TCONS_00000512 | mRNA | downstream | 258910 | 26071869 ~ 26096572 (+) | True | XLOC_000314 |
| TCONS_00000513 | mRNA | downstream | 286291 | 26099250 ~ 26103232 (+) | False | XLOC_000315 |
| TCONS_00000515 | mRNA | downstream | 292182 | 26105141 ~ 26109961 (+) | False | XLOC_000316 |
| TCONS_00000495 | other | upstream | 684437 | 25120089 ~ 25120205 (+) | True | XLOC_000301 |
| TCONS_00000490 | other | upstream | 1419945 | 24382967 ~ 24384697 (+) | True | XLOC_000295 |
| TCONS_00000480 | other | upstream | 1690084 | 24114525 ~ 24114558 (+) | True | XLOC_000287 |
| TCONS_00000478 | other | upstream | 1937677 | 23866878 ~ 23866965 (+) | True | XLOC_000285 |
| TCONS_00000472 | other | upstream | 2053429 | 23751099 ~ 23751213 (+) | True | XLOC_000283 |
| TCONS_00000518 | other | downstream | 298426 | 26111385 ~ 26119624 (+) | True | XLOC_000317 |
| TCONS_00000557 | other | downstream | 1900390 | 27713349 ~ 27730980 (+) | False | XLOC_000329 |
| TCONS_00000565 | other | downstream | 2164411 | 27977370 ~ 28001937 (+) | False | XLOC_000332 |
| TCONS_00000567 | other | downstream | 2171434 | 27984393 ~ 27995611 (+) | True | XLOC_000332 |
| TCONS_00000579 | other | downstream | 3255703 | 29068662 ~ 29080336 (+) | False | XLOC_000337 |
