XLOC_000329 (si:dkey-29d5.1)


Basic Information

Item Value
gene id XLOC_000329
gene name si:dkey-29d5.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27713349 ~ 27733179 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000557
TCGGTTCAACGCCAGTTCACCTGATGAGCGTCGACATTGAATCAAAAAAAAAATGCCAGGAGGATCAACTTTCAGGAAGTGCCCCCATTGCATGGAGAGACTCAACTGTGCAAATAGAAAGTGCACAAAGTGTGGGAAACTGCTTGATCTGAAATCCAGACAGACAGCAAGAATGAAGGTGTTCCGGGGCCAAGCACAAGAATGGGccaagaaaatgaaaaaatcacGCAATCAAGCAAAGGTTTTTGACAGTAGTGCCCTACTGGTTGAAAAACTGAAGGCCCTTGGATACTTTCCCCTCCTGCTGTGGGGAAAGTAtcatcctcaaaaaaaaaaatggacagcCCAGCTGCAGTGCCCATTTCAGTTGCCAGTTGTTGCACATGGGGTTATGGAAAAGATAATGTGCCTCTTTGAAGGTCTGTTAGAAGcatgTGATCTTGAAAGTGAGGAAGTGGGCCAAGAAAGTACAGGAGAAGAAGAGGAACCAGAACAAGAAATGCAAGATGAAAACCAGAGAGAACAGGCAGAGCAATGTGAGACAGGAGAGACCGAGAGGAGGGATGTCAAGGAACGGAGATAGAGGAACAAACAAAGGAAGACAGAgtagagagtgagagagagaaaataggAGAAATGGAGGGACAGAAAGAGGAACTGAAAGAACTAGATAGGATGGCCCCAGATGAAGAGAGAGCTCTGACTGAGAATCCTGCTGTCAAAATTGCTGCTAAAAAGAAAAGACATAA
>TCONS_00003079
TCGACATTGAATCAAGTAAGTAAGGGCTTTTCCCCTCTTTTTGTGATGAGATCACGGGGTTAactgcattttaataaattttgtgtTTCTTCATCACGTTACATGAGTCGTGTGTTAGAAATTGTGCGTTCAAAGTTGTTATTCAAGTGTAACATCTGGGTGTTCAGTTAGCACAGCTGGTAACTTAGCCCAGCTATCACATTACTGgagaaattattaataaattaatcagtttttatcATGTTGTGACATGATTGGACGTTTTTAAACATCGGGGATGACGGCACTGCAGATCTACAGATTAAATTATAGTAGTGTGCATGCATTTTCAAAGTATCCTTAATACGACAAGTTCTTTGCTGATTTCGttatgctatatatattttttttctatggatATATAACCTTAACGTTGGTTATTCTAAATTGTAATGAATCGGTCGAGGAAAGTCGCTATTAGCATTAAATACATTCTTTAACGAAATTTAAAGATTCGAGTCAGTAAAAAGCGAGTTTGTGCACATGCAGGCATCACTAGTTGCTTGCAGATCCATCCTATCGTATTATGCTCCTTTTTCggaatattagatttttttttttatctcatcaCAGATTAGCCGCATATGATTTTACCTAAAGCTAAATAAAGCACAGTTAAGACTAGTctgtttaaaaaagaataaataaacaaaataaaccgtTGAAGTCATAaaatatttcaacacatttctaaacataatagttttaataacttatgtGTGATGACTGATTTTCttatatttttgccatgatgacagaacataatattttactagatatttttcaagatagtagtattcaagtgcattttaaaggcgtaactaggttaattaggcaagtcattgtatagcagtTGTTTGATCtctagacaatcaaaaaacattgcttaagggggctaataatattgaccttaaatggtttataaaaatggtttttaaaaaaactgcttttattctagctgaaataaaacaaaatataggaaatactgtaaaatttaccttgctctgttacacataatttaggaaatatttgaaaaaaataaaaattaataaatcacatgagggcgaatcattttggctttaactgtataaaataaatattgagatGAAGCTTTTTCTCTGCTGTGTACACCGTTCCCATTGTGTTATTACTGTATAGTAAAATTACTGTCACAacctataaaatatatttattcaagaATATGGAAGTTCCAATAATGAGAGAAGGAAAGAACTAGTAAGTCAGTGTTTCCTAAGTATTAGTCAAAAAGCAAACATTACTAAATAATGTATCACTTCATTCAAAAAGTTACATATTTATGTGCAAAACAACTTAAATTTAAGCATTAAGTTACATAAATTTGAAATACAAATTAATCTTACAAAATAGTCACTTTTTATTACCTATtgttatatttctatatatttcatatctatatatctatatattttcaTTGCAAAGGCAATGTAATGGGAAATTAAttgttagaaatatttttttttcttttgtttctagAAAAAAAATGCCAGGAGGATCAACTTTCAGGAAGTGCCCCCATTGCATGGAGAGACTCAACTGTGCAAATAGAAAGTGCACAAAGGTAAATAATGTACAATAGGCTGTATGAAAcggcaaactgatatttttaggAATTCAAGCCAGAGTCATTTAGTCCAAAATCAAACAATGTTTATACACTTTGACATGTCACAGTTCCTGGGCCCAAGCACTCTATACTGTGATGCTCAACAACGTACTGTGGTACTTTTTGAAAATCATGATTTATATCCATGCATAATATCTGATAGTCTggaagtgattcattttttatataattaaaatatttgtgtcTGGGAAGCAGTAAATTGAGATTAAGTAGTAAGCACTGTTTTTTTAAGAGATTGGATGAAATATGTGATATGACTAAACAGTGAGTGCAATATAAACTATTTTCTTGATTCAAATGAGTAgaggcttggacctggaaaccaTATTCCATATGTCACAACTTACCAAGCAGGTTGGCATTAAATATCTCAGTTTTGGTATGCCGAATAATAAaggcattttttttaaactagagttTGCAAATTAAAGTTAATAACACAAAAGAATAGTTATAGAAATATGTATTGTTACTCTACAAGTTTGCTTTACACTAGGCATTTtccaaaacattacatttcacacATTATGGAAATGTACCGGCTGACATTGATGTTTGACTGTTTGGTCCTTTAAATAATTTTCTCTTAGTGTGCTACAGTTTTAACATTGAATCTTTTTTTATATTGCAGTGATTCCATAGTGTGGTCACTCGGTTTATTGAGATTTTCTGTAATTTGTTTACCAAATTTAAGAAAAGAAGTAATAAAAGTTATTGACTAGTGCATGCAATAGTGAcaacttaataaataatttatatggcCAGATAATGGACAGGCATATTTTCTGTTAAAATATGTATACACAACTAATAAGGTTTGTAGCCTCTTGTGTATATTATTACAATGTCTGGTGCATTGCCTCAGCTTTATATTTATTCTCTCTGTTCAATTAATTTCATGAACTTGTTATTCAGGTAATTATATACTTATTATAATAGTGGTAGAAAATCAGCAATGCTTAATCAAATAGAGCCCAATTTAGAACCTATTGCcttactctcttttttttctttctttgtatcTTTCCCTTGGTCAGTGTGGGAAACTGCTTGATCTGAAATCCAGACAGACAGCAAGAATGAAGGTGTTCCGGGGCCAAGCACAAGAATGGGccaagaaaatgaaaaaatcacGCAATCAAGCAAAGGTTTTTGACAGTAGTGCCCT
>TCONS_00000558
CGACATTGAATCAAttgtttctagAAAAAAAATGCCAGGAGGATCAACTTTCAGGAAGTGCCCCCATTGCATGGAGAGACTCAACTGTGCAAATAGAAAGTGCACAAAGTGTGGGAAACTGCTTGATCTGAAATCCAGACAGACAGCAAGAATGAAGGTGTTCCGGGGCCAAGCACAAGAATGGGccaagaaaatgaaaaaatcacGCAATCAAGCAAAGGTTTTTGACAGTAGTGCCCTACTGGTTGAAAAACTGAAGGCCCTTGGATACTTTCCCCTCCTGCTGTGGGGAAAGTAtcatcctcaaaaaaaaaaatggacagcCCAGCTGCAGTGCCCATTTCAGTTGCCAGTTGTTGCACATGGGGTTATGGAAAAGATAATGTGCCTCTTTGAAGGTCTGTTAGAAGGAATCCTGCTGTCAAAATTGCTGCTAAAAAGAAAAGACATAAAAGAAGCCAACTCAAGGATGATGcctGCCAGTTTCACAGCAAATTGGAAATTTTTCCAGTACAATATGTGTCCAAGACACGTGAAAACAAGGGCTGTAAAGAAGTACTGGTTCATTGGCACCCGTGCCCATCGTGCCAAAAGACCTGGCCTCCATCTTGGGAACCACAGGGGAACATACAAATGACAGTGTCAGGTTGATGCCAACTTTCCTACCACCTAAAATGAGATTAAGAGAAATAGTGTTAATACTAATTATCTCCATTAAAGCTATACATGACTGAATAAAATGGATTTGCTGTCGACAACAAAACACATGATTGTAGCGTTCTGATTGGCAGGTTCAGCCTTTTCATTTCACAGTTCTGGTAATTTGAGTTATAAATATGGAATTGGGAGTTTATATAACAGTATAATTAAAAAGACTGTCAATAAAGTCATAATTGTGAGAATTATATAAAGAAAGTCTGCTAAAAGTTCAGTTGTTACCTTGGTggttcaaataaaaaatgttattttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104096

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000557 False 749 nonsense_mediated_decay 0.45 6 27713349 27730980
TCONS_00003079 False 2873 lncRNA 0.31 1 27713379 27716251
TCONS_00000558 True 970 mRNA 0.40 8 27713380 27733179

Neighbor

gene id symbol gene type direction distance location
XLOC_000328 bnc2 coding upstream 500890 27023687 ~ 27212459 (+)
XLOC_000327 NA coding upstream 972200 26740115 ~ 26741149 (+)
XLOC_000326 si:dkey-25o16.4 coding upstream 1012910 26676758 ~ 26700439 (+)
XLOC_000325 NA coding upstream 1042139 26664689 ~ 26671210 (+)
XLOC_000324 coro2a coding upstream 1059038 26605065 ~ 26654311 (+)
XLOC_000330 pspc1 coding downstream 75737 27808916 ~ 27861148 (+)
XLOC_000331 dnajb14 coding downstream 134527 27867706 ~ 27894817 (+)
XLOC_000332 sugt1 coding downstream 244118 27977297 ~ 28020042 (+)
XLOC_000333 chst10 coding downstream 298518 28031697 ~ 28047242 (+)
XLOC_000334 psip1a coding downstream 356524 28089703 ~ 28195267 (+)
XLOC_000323 AL954695.3 non-coding upstream 1128756 26577288 ~ 26584593 (+)
XLOC_000322 AL954695.2 non-coding upstream 1158510 26551034 ~ 26554839 (+)
XLOC_000308 NA non-coding upstream 1991647 25719653 ~ 25721702 (+)
XLOC_000335 NA non-coding downstream 739020 28472199 ~ 28473413 (+)
XLOC_000336 CU469541.1 non-coding downstream 1170591 28903770 ~ 28904635 (+)
XLOC_000340 BX908780.5 non-coding downstream 1441016 29174195 ~ 29180648 (+)
XLOC_000346 BX908780.2 non-coding downstream 1578348 29311527 ~ 29312559 (+)
XLOC_000347 CT573186.1 non-coding downstream 1711273 29444452 ~ 29445719 (+)

Expression


Co-expression Network