XLOC_000334 (psip1a)


Basic Information

Item Value
gene id XLOC_000334
gene name psip1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28089703 ~ 28195267 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000575
AATATCTATTAATAGAAGAAGAAGACACCGCCGCTGCAAAGTTGCTTTAAGGAACCAAGGGGGAGCATCTTTATTGACATGGCTCAGGATTTCAAAGCTGGTGATCTGATTTTTGCTAAGATGAAGGGTTATCCACACTGGCCTGCAAGGATTGATGAGATTCCAGATGGTGCTGTCAAACCATCAAATATAAAATTTCCCATCTTCTTTTTTGGCACTCATGAAACAGCATTCCTGGGTCCTAAAGACATATTCCCCTATTTGACCAATAAAGACAAATATGGCAAACCTAACAAAAGGAAGGGTTTCAATGAAGGCTTGTGGGAAATTGAAAACAATCCTAAAGTGGAGCTTAATGGACACAAGGTAAAAAAGGTTGGAGAAGTTTCAATTAAAGATTTGAGCAGCAATGAAGAGGGAGATGATGAGAAGAGGACAAAGTCAGCTCAAATTGCTCACAGTGAGGGGCTGGAGGACGAGGTGGACATTGAGAAGGAAGATGGTGGTGACATGGACGTTTCTGATCAGAGACTTGTTAAAGATGAAGACCTATCACAGAAAGATTCGACAAATGTCACTGCCAAAGCTAAAAGAGGAAGGAAGAGAAAGAGTGATGCTGAACAAGACTCTGATACAGAAAATTCAAGCCCAACTGCAGGCGGTTCCGGTTTAGATTTCCTATCAACAGGTACATCAATTATGTTACTGAAGCGCAGAGGAAGGAAATCTAAAACAGAGAAGTCAATAATACTACAACAACAGGCTTCAAAGGAATTACCAAGGTCAGGTAAAGATGGAAAGAGAGATGAAAGAAAAGGTGACAAAAGAAAGGAGTCCACACTGCAGAAGTTGCACGGGGAGATTAAGACATCATTGAAGATTGGTAATTTAGATGTAAGGAAATGTGTACATGCATTGGATGAGTTAAGCTCTCTACATGTTACCACTCAACATCTTCAGAGACATAGTGAACTCATAGCAACTCTGAAAAAGATCTGCAGATTCAAATCCAGCCAGGATGTGATGGACAAAGCTATTATGCTATATAATAAgtttaaaagtatgtttttaaTGGGAGAAGGAGAATCAGTGCTAAGTCAGGTGCTCAATAAAAGTCTGACTGAACAGAAACTATTTGAAGAAGCCAAGAGGGGAGTCCTAAAAAACACAGAACAAACTAAAGAGCAGAAAGATACCAAGATTTTGAATGAAGACTTCAACTCCGAAGAGGACGCTGAGACAGAGAAGGACAAATTAGGAGGAAACATCTTATCTATGGTGAAAAACAACATGACTAATCCTGCAGAAGAGTCTGTCTGAAAATGATGTTTGTTCACTGAAGCCACCAATCTCAGCTGCCCAATGGAAGATCATCATATTTCAAGCATATTTTTAGTATTAGATTTACTGTTTACTGCCTCTAAGtaaatttttaacagtgcatttaTCAAATCTACTTAGTGAAAATGTGTCAAAGTTTAGCTTTTAGTTTTTGCATTATATCTAAagctgtgtttattttaatagttgATCCTTGTGTTTCATCAGACTGCTTTAATAAAAACCTGTTTAATCATA

Function

symbol description
psip1a Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in adaxial cell; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human PSIP1 (PC4 and SFRS1 interacting protein 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-104 Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in adaxial cell; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human PSIP1 (PC4 and SFRS1 interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000104710

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000575 True 1578 mRNA 0.38 15 28089703 28195267

Neighbor

gene id symbol gene type direction distance location
XLOC_000333 chst10 coding upstream 42461 28031697 ~ 28047242 (+)
XLOC_000332 sugt1 coding upstream 69661 27977297 ~ 28020042 (+)
XLOC_000331 dnajb14 coding upstream 194886 27867706 ~ 27894817 (+)
XLOC_000330 pspc1 coding upstream 228555 27808916 ~ 27861148 (+)
XLOC_000329 si:dkey-29d5.1 coding upstream 356524 27713349 ~ 27733179 (+)
XLOC_000335 NA coding downstream 276932 28472199 ~ 28473413 (+)
XLOC_000336 CU469541.1 coding downstream 708503 28903770 ~ 28904635 (+)
XLOC_000337 cbsa coding downstream 873382 29068649 ~ 29093562 (+)
XLOC_000338 cryaa coding downstream 901614 29096881 ~ 29100923 (+)
XLOC_000339 ankrd10a coding downstream 945617 29140884 ~ 29164911 (+)
XLOC_000327 NA non-coding upstream 1348554 26740115 ~ 26741149 (+)
XLOC_000325 NA non-coding upstream 1418493 26664689 ~ 26671210 (+)
XLOC_000323 AL954695.3 non-coding upstream 1505110 26577288 ~ 26584593 (+)
XLOC_000322 AL954695.2 non-coding upstream 1534864 26551034 ~ 26554839 (+)
XLOC_000308 NA non-coding upstream 2368001 25719653 ~ 25721702 (+)
XLOC_000340 BX908780.5 non-coding downstream 978928 29174195 ~ 29180648 (+)
XLOC_000346 BX908780.2 non-coding downstream 1116260 29311527 ~ 29312559 (+)
XLOC_000347 CT573186.1 non-coding downstream 1249185 29444452 ~ 29445719 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000048_00036432_00113057 PSIP1 coding CI01000048 null 36432 ~ 113057 (+)