XLOC_000338 (cryaa)


Basic Information

Item Value
gene id XLOC_000338
gene name cryaa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29096881 ~ 29100923 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000581
AAGGCCGGCACACATCATTTGGGGATCTTTGTACTGTACTAGCCTCTATTAGCCTCCTACTTGCGTTCAGTTCACATCTTTTGTTCATCAGGTGCAATAAGTTACAGTAAGGAGTTACCAGGTCTGACATTATGGATATTGCGATCCAACACCCTTGGTTCAGACGCACACTGGGCTACCCCACCCGACTCTTTGATCAGTTCTTTGGAGAAGGCCTGTTCGATTATGACCTATTCCCCTTCACCACTTCAACTGTCAGCCCTTACTATCGACACTCACTCTTCCGCAACATCCTGGACTCCTCCAACTCAGGTGTCTCTGAGGTGAGGTCTGACAGagaaaaatttacagtttatctGGATGTGAAACATTTCTCTCCTGATGAGCTCAGTGTCAAGGTGACAGATGACTATGTGGAGATCCAGGGCAAGCATGGAGAAAGACAGGATGATCATGGCTACATCTCCCGTGAGTTCCATCGTCGCTACCGCCTGCCTTCCAATGTGGACCAGTCTGCCATCACCTGCACACTGTCTGCTGATGGCCTGCTCACTCTTTGTGGACCCAAGACAAGTGGCATAGATGCTGGCCGTGGAGATCGCACCATCCCTGTTACCCGCGAGGACAAGAGCAACTCAGGCTCTTCCTCCTAGACAGGCTGAACCCACAGCCAGGTGGTGGTATGGAGGTGTGAGTGGGGCTGAATGGGGGGCCTAGGCTTTAATTTCAGAGGGCATCTAAAGGTGGATTCAAGCAAATCCTCTATTTGTTTATCACTAAGCAAGTCCCTCCTCCCACCTCCGGGTGTCAGTGTATATCTGGCCCTTTATTCTTTCATTTGACTACACTAGCTAATAATCTTCATAATCCActatgattgttttattttttccttataTGCTACTCACACAGGAAATGGACCAGGCTGATTGGATGACAGTCACAATATCatttcgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatataagcatctGTCCCACTTTCCAGTCGGCAGTTAAGTGACAAGCAATTCTGAATTCTACAAGCTTCTGATTTTGACCAACCTGGTGACAGAGTAAAAGTGatcattatttaaatgcatatttcttTTGCTGTAGAGAACACATAGTTCTGAGAAGGGATGTCAACAGGGGTTTAagagcttatttaaaaaaaaaaatttctgtttGACGACTTAATCCAAAAGAGATTTTATAACTGGCACCAGTCAAACCTCCGCTTTCTCCCTAACCTGTGTCAAGACCTCTTTTGTCATCGACTCTTTCTCGTCTTGTAGGGTTAGCCTTGTTCTACTGATTACTGACTCCACATGGGGCCATAAAAAGTGATCAAAGATAATAAAGATGTAACCTTAACCTTTCAGAAAA

Function

symbol description
cryaa Enables unfolded protein binding activity. Acts upstream of or within lens development in camera-type eye. Is expressed in eye; lens; and solid lens vesicle. Used to study cataract. Human ortholog(s) of this gene implicated in cataract 9 multiple types. Orthologous to human CRYAA (crystallin alpha A).

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0001654 eye development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-020508-1 Enables unfolded protein binding activity. Acts upstream of or within lens development in camera-type eye. Is expressed in eye; lens; and solid lens vesicle. Used to study cataract. Human ortholog(s) of this gene implicated in cataract 9 multiple types. Orthologous to human CRYAA (crystallin alpha A).

Ensembl:

ensembl_id ENSDARG00000053502

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000581 True 1417 mRNA 0.43 3 29096881 29100923

Neighbor

gene id symbol gene type direction distance location
XLOC_000337 cbsa coding upstream 3319 29068649 ~ 29093562 (+)
XLOC_000336 CU469541.1 coding upstream 192246 28903770 ~ 28904635 (+)
XLOC_000335 NA coding upstream 623468 28472199 ~ 28473413 (+)
XLOC_000334 psip1a coding upstream 901614 28089703 ~ 28195267 (+)
XLOC_000333 chst10 coding upstream 1049639 28031697 ~ 28047242 (+)
XLOC_000339 ankrd10a coding downstream 39961 29140884 ~ 29164911 (+)
XLOC_000340 BX908780.5 coding downstream 73272 29174195 ~ 29180648 (+)
XLOC_000341 si:ch211-198k9.6 coding downstream 77194 29178117 ~ 29179934 (+)
XLOC_000342 cars2 coding downstream 83039 29183962 ~ 29202689 (+)
XLOC_000343 irs2a coding downstream 110617 29211540 ~ 29228393 (+)
XLOC_000327 NA non-coding upstream 2355732 26740115 ~ 26741149 (+)
XLOC_000325 NA non-coding upstream 2425671 26664689 ~ 26671210 (+)
XLOC_000323 AL954695.3 non-coding upstream 2512288 26577288 ~ 26584593 (+)
XLOC_000346 BX908780.2 non-coding downstream 210604 29311527 ~ 29312559 (+)
XLOC_000347 CT573186.1 non-coding downstream 343529 29444452 ~ 29445719 (+)
XLOC_000348 CT573186.2 non-coding downstream 350542 29451465 ~ 29452733 (+)
XLOC_000349 NA non-coding downstream 399385 29500308 ~ 29501034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_00326545_00329242 NA coding CI01000049 null 326320 ~ 329936 (+)