XLOC_000341 (si:ch211-198k9.6)


Basic Information

Item Value
gene id XLOC_000341
gene name si:ch211-198k9.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29178117 ~ 29179934 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000586
GTCACGTGTTCATCATCAGCATCCATGACAACCGTTCTGTGGGTGTTGTTTGAATCTCGCTTTGTCGATTGGCATCTGACCTCTGCGTCCTTCGTGACAATTTTTCCGGATTATCGATATTATTGATCGTTGGATACGTCGCTTGATCGCCTGCTGTTCCCATCACTCAGGTTTGACCCTTTTTATTACGctgtgctttgtgtttgtgttcagtatgTCTTGTGTTCACTACAGGTTCCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAAGGCCTCAACATCAGCGCGGGGGAGCTGAAGCGGCAGATCATGAGGAGCAAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAACGCCCAGACTGATGAAGaataCACAGATGATGCTCTCATCCCTAAAAACACGTCGGTCATCATCAGACGGATCCCTGCGGCGGGACTGAAGTCCTCAAACAGAAGATTTGTTGGacatcaagctGGACGCTGGCGTGAACTTTCACCAAGAGCTGATCCTTCACTCCTCTCCCTGGAGCAGTTGTTGaagaccgagaatctggctgaggcaaaggcgtcagaggaggacaagctgaaagcggtgatgtaccagtccagcctgtgctactactccagcagGGCAGCGGCTCCGCTCCGCACAAGCGCATCCGGAAGAGCACAGGGATTCCCCGCAGCTTTCTGTTGGAGGTGGATGACACAGACCGAAAGGGAGTCATGATAGACGGCAGCGGCAGATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAGAAAGAGGCCATCCTTCTCCTGCCAGACCGAGCCTTTGCCCTCCTCGTCCTCAGCAGGTGCGGCATCTTCGGTCCGGGACGCCGGAGGGAAACGGTCCCGCTCCCCATCTGCACCAGAGACCCGCGGCGACCAGAAGAGACCACGTCGCTGAGAGACCTTCATCCAAGAGCCCTGGAGCCGacgtgtaaatattgtacatagtttattaataaaagataataaagattATAGCTGCA
>TCONS_00000588
CAACCGTTCTGTGGGTGTTGTTTGAATCTCGCTTTGTCGATTGGCATCTGACCTCTGCGTCCTTCGTGACAATTTTTCCGGATTATCGATATTATTGATCGTTGGATACGTCGCTTGATCGCCTGCTGTTCCCATCACTCAGGTTTGACCCTTTTTATTACGctgtgctttgtgtttgtgttcagtatgTCTTGTGTTCACTACAGGTTCCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAAGGCCTCAACATCAGCGCGGGGGAGCTGAAGCGGCAGATCATGAGGAGCAAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAACGCCCAGACTGATGAAGaataCACAGATGATGCTCTCATCCCTAAAAACACGTCGGTCATCATCAGACGGATCCCTGCGGCGGGACTGAAGTCCTCAAACAGAAGATTTGTTGGacatcaagctGGACGCTGGCGTGAACTTTCACCAAGAGCTGATCCTTCACTCCTCTCCCTGGAGCAGTTGTTGaagaccgagaatctggctgaggcaaaggcgtcagaggaggacaagctgaaagcggtgatgtaccagtccagcctgtgctactactccagcaggtgagcgttcagacactgacaggtttgCTTTGTGAGAAATGTCTGAGCTGATTCTCATGGTTCTGATATTCACTAGTGAGGCCATGAGGCTGCTTGGGATCCCGGGACACCACATTAGGCACTGCCCCACTAATGTGGTAACTGGGTTTTCCAAGCTCACGGTTGCTGTGAACTTGAGCTCTTGTCCTCATCAGTCAGATTGTTTGCCCAGAGTTTGACTGTCACTCCTCAATTCACAGGGCAGCGGCTCCGCTCCGCACAAGCGCATCCGGAAGAGCACAGGGATTCCCCGCAGCTTTCTGTTGGAGGTGGATGACACAGACCGAAAGGGAGTCATGATAGACGGCAGCGGCAGATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAGAAAGAGGCCATCCTTCTCCTGCCAGACCGAGCCTTTGCCCTCCTCGTCCTCAGCAGGTGCGGCATCTTCGGTCCGGGACGCCGGAGGGAAACGGTCCCGCTCCCCATCTGCACCAGAGACCCGCGGCGACCAGAAGAGACCACGTCGCTGAGAGACCTTCATCCAAGAGCCCTGGAGCCGacgtgtaaatattgtacatagtttattaataaaagataataaagattATAGCTGCATGAA
>TCONS_00000587
CAACCGTTCTGTGGGTGTTGTTTGAATCTCGCTTTGTCGATTGGCATCTGACCTCTGCGTCCTTCGTGACAATTTTTCCGGATTATCGATATTATTGATCGTTGGATACGTCGCTTGATCGCCTGCTGTTCCCATCACTCAGGTTTGACCCTTTTTATTACGctgtgctttgtgtttgtgttcagtatgTCTTGTGTTCACTACAGGTTCCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAAGGCCTCAACATCAGCGCGGGGGAGCTGAAGCGGCAGATCATGAGGAGCAAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAACGCCCAGACTGATGAAGaataCACAGATGATGCTCTCATCCCTAAAAACACGTCGGTCATCATCAGACGGATCCCTGCGGCGGGACTGAAGTCCTCAAACAGAAGATTTGTTGGacatcaagctGGACGCTGGCGTGAACTTTCACCAAGAGCTGATCCTTCACTCCTCTCCCTGGAGCAGTTGTTGaaggtattgaacaaatgaatagCACAATAGCAAAACGCAATGTAAAGCACAcaatatacgcacacacactcagcttcttagggagatttgagattgtttGAGGGGTTGAGGgtgaaaaagattcaaatgtgcaaatgcctgtgaaacagaccgagaatctggctgaggcaaaggcgtcagaggaggacaagctgaaagcggtgatgtaccagtccagcctgtgctactactccagcaggtgagcgttcagacactgacaggtttgCTTTGTGAGAAATGTCTGAGCTGATTCTCATGGTTCTGATATTCACTAGTGAGGCCATGAGGCTGCTTGGGATCCCGGGACACCACATTAGGCACTGCCCCACTAATGTGGTAACTGGGTTTTCCAAGCTCACGGTTGCTGTGAACTTGAGCTCTTGTCCTCATCAGTCAGATTGTTTGCCCAGAGTTTGACTGTCACTCCTCAATTCACAGGGCAGCGGCTCCGCTCCGCACAAGCGCATCCGGAAGAGCACAGGGATTCCCCGCAGCTTTCTGTTGGAGGTGGATGACACAGACCGAAAGGGAGTCATGATAGACGGCAGCGGCAGATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAGAAAGAGGCCATCCTTCTCCTGCCAGACCGAGCCTTTGCCCTCCTCGTCCTCAGCAGGTGCGGCATCTTCGGTCCGGGACGCCGGAGGGAAACGGTCCCGCTCCCCATCTGCACCAGAGACCCGCGGCGACCAGAAGAGACCACGTCGCTGAGAGACCTTCATCCAAGAGCCCTGGAGCCGacgtgtaaatattgtacatagtttattaataaaagataataaagattATAGCTGCATGAA
>TCONS_00000589
atgTCTTGTGTTCACTACAGGTTCCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAAGGCCTCAACATCAGCGCGGGGGAGCTGAAGCGGCAGATCATGAGGAGCAAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAACGCCCAGACTGATGAAGaataCACAGATGATGCTCTCATCCCTAAAAACACGTCGGTCATCATCAGACGGATCCCTGCGGCGGGACTGAAGTCCTCAAACAGAAGATTTGTTGGacatcaagctGGACGCTGGCGTGAACTTTCACCAAGAGCTGATCCTTCACTCCTCTCCCTGGAGCAGTTGTTGaagaccgagaatctggctgaggcaaaggcgtcagaggaggacaagctgaaagcggtgatgtaccagtccagcctgtgctactactccagcagGGCAGCGGCTCCGCTCCGCACAAGCGCATCCGGAAGAGCACAGGGATTCCCCGCAGCTTTCTGTTGGAGGTGGATGACACAGACCGAAAGGGAGTCATGA

Function

symbol description
si:ch211-198k9.6 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000069804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000586 False 1036 mRNA 0.53 6 29178117 29179930
TCONS_00000588 False 1251 lncRNA 0.52 5 29178145 29179934
TCONS_00000587 False 1397 lncRNA 0.51 4 29178145 29179934
TCONS_00000589 True 522 mRNA 0.55 5 29178331 29179533

Neighbor

gene id symbol gene type direction distance location
XLOC_000339 ankrd10a coding upstream 13206 29140884 ~ 29164911 (+)
XLOC_000338 cryaa coding upstream 77194 29096881 ~ 29100923 (+)
XLOC_000337 cbsa coding upstream 84555 29068649 ~ 29093562 (+)
XLOC_000336 CU469541.1 coding upstream 273482 28903770 ~ 28904635 (+)
XLOC_000335 NA coding upstream 704704 28472199 ~ 28473413 (+)
XLOC_000342 cars2 coding downstream 4028 29183962 ~ 29202689 (+)
XLOC_000343 irs2a coding downstream 31606 29211540 ~ 29228393 (+)
XLOC_000344 lig4 coding downstream 87907 29267841 ~ 29271473 (+)
XLOC_000345 fam155a coding downstream 101830 29281764 ~ 29391034 (+)
XLOC_000346 BX908780.2 coding downstream 131593 29311527 ~ 29312559 (+)
XLOC_000327 NA non-coding upstream 2436968 26740115 ~ 26741149 (+)
XLOC_000325 NA non-coding upstream 2506907 26664689 ~ 26671210 (+)
XLOC_000323 AL954695.3 non-coding upstream 2593524 26577288 ~ 26584593 (+)
XLOC_000347 CT573186.1 non-coding downstream 264518 29444452 ~ 29445719 (+)
XLOC_000348 CT573186.2 non-coding downstream 271531 29451465 ~ 29452733 (+)
XLOC_000349 NA non-coding downstream 320374 29500308 ~ 29501034 (+)
XLOC_000350 CR774189.1 non-coding downstream 327713 29507647 ~ 29508473 (+)

Expression


Co-expression Network