RNA id: TCONS_00000587


Basic Information

Item Value
RNA id TCONS_00000587
length 1397
lncRNA type retained_intron
GC content 0.51
exon number 4
gene id XLOC_000341
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29178117 ~ 29179934 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACCGTTCTGTGGGTGTTGTTTGAATCTCGCTTTGTCGATTGGCATCTGACCTCTGCGTCCTTCGTGACAATTTTTCCGGATTATCGATATTATTGATCGTTGGATACGTCGCTTGATCGCCTGCTGTTCCCATCACTCAGGTTTGACCCTTTTTATTACGctgtgctttgtgtttgtgttcagtatgTCTTGTGTTCACTACAGGTTCCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAAGGCCTCAACATCAGCGCGGGGGAGCTGAAGCGGCAGATCATGAGGAGCAAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAACGCCCAGACTGATGAAGaataCACAGATGATGCTCTCATCCCTAAAAACACGTCGGTCATCATCAGACGGATCCCTGCGGCGGGACTGAAGTCCTCAAACAGAAGATTTGTTGGacatcaagctGGACGCTGGCGTGAACTTTCACCAAGAGCTGATCCTTCACTCCTCTCCCTGGAGCAGTTGTTGaaggtattgaacaaatgaatagCACAATAGCAAAACGCAATGTAAAGCACAcaatatacgcacacacactcagcttcttagggagatttgagattgtttGAGGGGTTGAGGgtgaaaaagattcaaatgtgcaaatgcctgtgaaacagaccgagaatctggctgaggcaaaggcgtcagaggaggacaagctgaaagcggtgatgtaccagtccagcctgtgctactactccagcaggtgagcgttcagacactgacaggtttgCTTTGTGAGAAATGTCTGAGCTGATTCTCATGGTTCTGATATTCACTAGTGAGGCCATGAGGCTGCTTGGGATCCCGGGACACCACATTAGGCACTGCCCCACTAATGTGGTAACTGGGTTTTCCAAGCTCACGGTTGCTGTGAACTTGAGCTCTTGTCCTCATCAGTCAGATTGTTTGCCCAGAGTTTGACTGTCACTCCTCAATTCACAGGGCAGCGGCTCCGCTCCGCACAAGCGCATCCGGAAGAGCACAGGGATTCCCCGCAGCTTTCTGTTGGAGGTGGATGACACAGACCGAAAGGGAGTCATGATAGACGGCAGCGGCAGATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAGAAAGAGGCCATCCTTCTCCTGCCAGACCGAGCCTTTGCCCTCCTCGTCCTCAGCAGGTGCGGCATCTTCGGTCCGGGACGCCGGAGGGAAACGGTCCCGCTCCCCATCTGCACCAGAGACCCGCGGCGACCAGAAGAGACCACGTCGCTGAGAGACCTTCATCCAAGAGCCCTGGAGCCGacgtgtaaatattgtacatagtttattaataaaagataataaagattATAGCTGCATGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000149219

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000577 lncRNA upstream 106789 29068649 ~ 29071356 (+) False XLOC_000337
TCONS_00000576 lncRNA upstream 273510 28903770 ~ 28904635 (+) True XLOC_000336
TCONS_00003080 lncRNA upstream 704732 28472199 ~ 28473413 (+) True XLOC_000335
TCONS_00000568 lncRNA upstream 1141997 28031697 ~ 28036148 (+) False XLOC_000333
TCONS_00000591 lncRNA downstream 4038 29183972 ~ 29185269 (+) True XLOC_000342
TCONS_00000595 lncRNA downstream 131593 29311527 ~ 29312559 (+) True XLOC_000346
TCONS_00000596 lncRNA downstream 264518 29444452 ~ 29445719 (+) True XLOC_000347
TCONS_00000597 lncRNA downstream 271531 29451465 ~ 29452733 (+) True XLOC_000348
TCONS_00002842 lncRNA downstream 320374 29500308 ~ 29501034 (+) True XLOC_000349
TCONS_00000582 mRNA upstream 13234 29140884 ~ 29164911 (+) False XLOC_000339
TCONS_00000584 mRNA upstream 13795 29162478 ~ 29164350 (+) True XLOC_000339
TCONS_00000583 mRNA upstream 35647 29140981 ~ 29142498 (+) False XLOC_000339
TCONS_00000581 mRNA upstream 77222 29096881 ~ 29100923 (+) True XLOC_000338
TCONS_00000578 mRNA upstream 84583 29068654 ~ 29093562 (+) False XLOC_000337
TCONS_00000590 mRNA downstream 4028 29183962 ~ 29202689 (+) False XLOC_000342
TCONS_00000592 mRNA downstream 31606 29211540 ~ 29228393 (+) True XLOC_000343
TCONS_00000593 mRNA downstream 87907 29267841 ~ 29271473 (+) True XLOC_000344
TCONS_00000594 mRNA downstream 101830 29281764 ~ 29391034 (+) True XLOC_000345
TCONS_00000599 mRNA downstream 335226 29515160 ~ 29519002 (+) True XLOC_000351
TCONS_00000579 other upstream 97809 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000565 other upstream 1176208 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other upstream 1182534 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000557 other upstream 1447165 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 3058521 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000608 other downstream 651825 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 986019 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 1047457 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 1775991 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 1877306 31057240 ~ 31063850 (+) True XLOC_000367

Expression Profile

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