Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000632 |
| length | 873 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.43 |
| exon number | 6 |
| gene id | XLOC_000367 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 31019165 ~ 31064706 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0021782 | glial cell development | biological_process |
| GO:0007229 | integrin-mediated signaling pathway | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0008305 | integrin complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-050320-5 | Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in myotome. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa and junctional epidermolysis bullosa with pyloric atresia. Orthologous to human ITGA6 (integrin subunit alpha 6). |
| ensembl_id | ENSDART00000148844 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000630 | lncRNA | upstream | 2058 | 31054415 ~ 31055182 (+) | False | XLOC_000367 |
| TCONS_00002845 | lncRNA | upstream | 197716 | 30855390 ~ 30859524 (+) | True | XLOC_000365 |
| TCONS_00000626 | lncRNA | upstream | 199315 | 30853969 ~ 30857925 (+) | False | XLOC_000365 |
| TCONS_00000621 | lncRNA | upstream | 329621 | 30723380 ~ 30727619 (+) | False | XLOC_000364 |
| TCONS_00002844 | lncRNA | upstream | 977711 | 30074710 ~ 30079529 (+) | False | XLOC_000358 |
| TCONS_00003082 | lncRNA | downstream | 77269 | 31141119 ~ 31144527 (+) | False | XLOC_000369 |
| TCONS_00000636 | lncRNA | downstream | 77467 | 31141317 ~ 31144527 (+) | True | XLOC_000369 |
| TCONS_00002847 | lncRNA | downstream | 290735 | 31354585 ~ 31359319 (+) | False | XLOC_000370 |
| TCONS_00002846 | lncRNA | downstream | 290735 | 31354585 ~ 31359319 (+) | False | XLOC_000370 |
| TCONS_00002848 | lncRNA | downstream | 292499 | 31356349 ~ 31359319 (+) | True | XLOC_000370 |
| TCONS_00000627 | mRNA | upstream | 83075 | 30946231 ~ 30974165 (+) | False | XLOC_000366 |
| TCONS_00000625 | mRNA | upstream | 321762 | 30723677 ~ 30735478 (+) | True | XLOC_000364 |
| TCONS_00000623 | mRNA | upstream | 322444 | 30723458 ~ 30734796 (+) | False | XLOC_000364 |
| TCONS_00000624 | mRNA | upstream | 322877 | 30723461 ~ 30734363 (+) | False | XLOC_000364 |
| TCONS_00000622 | mRNA | upstream | 329233 | 30723380 ~ 30728007 (+) | False | XLOC_000364 |
| TCONS_00000633 | mRNA | downstream | 46967 | 31110817 ~ 31130222 (+) | False | XLOC_000368 |
| TCONS_00000634 | mRNA | downstream | 48586 | 31112436 ~ 31130222 (+) | False | XLOC_000368 |
| TCONS_00000635 | mRNA | downstream | 50101 | 31113951 ~ 31129604 (+) | True | XLOC_000368 |
| TCONS_00000638 | mRNA | downstream | 509375 | 31573225 ~ 31598417 (+) | True | XLOC_000372 |
| TCONS_00000639 | mRNA | downstream | 574424 | 31638274 ~ 31643502 (+) | False | XLOC_000373 |
| TCONS_00000628 | other | upstream | 92236 | 30955925 ~ 30965004 (+) | True | XLOC_000366 |
| TCONS_00000618 | other | upstream | 829735 | 30227391 ~ 30227505 (+) | True | XLOC_000361 |
| TCONS_00000617 | other | upstream | 891175 | 30165953 ~ 30166065 (+) | True | XLOC_000360 |
| TCONS_00000608 | other | upstream | 1196867 | 29831759 ~ 29860373 (+) | False | XLOC_000356 |
| TCONS_00000579 | other | upstream | 1976904 | 29068662 ~ 29080336 (+) | False | XLOC_000337 |
| TCONS_00000645 | other | downstream | 642819 | 31706669 ~ 31722875 (+) | True | XLOC_000376 |
| TCONS_00000653 | other | downstream | 987763 | 32051613 ~ 32065030 (+) | False | XLOC_000384 |
| TCONS_00000657 | other | downstream | 1450139 | 32513989 ~ 32514104 (+) | True | XLOC_000386 |
| TCONS_00000661 | other | downstream | 1642259 | 32706109 ~ 32706227 (+) | True | XLOC_000388 |
| TCONS_00000663 | other | downstream | 2151391 | 33215241 ~ 33216718 (+) | False | XLOC_000390 |
