XLOC_000367 (itga6b)


Basic Information

Item Value
gene id XLOC_000367
gene name itga6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31019165 ~ 31064706 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000629
ATTCACAACCCCACCAGAAGCGGACTGAGTCTCATCTCTAAAGCCAGAACTCACACAAACTGAACCTGAACACAGACATGGAATCTTACAGGACTTTAACCGTACCGCTTCTCAGTTTGTTGGGATTGACGCTGATCTCCGCCTTTAATCTGGACACAGTGaacgtcatcaggaaaacggGAGATGCCAACAGCTTGTTTGGGTTCTCCATGGCCATGCACCGACAACTCAGACCAGCTGATAAAAGAATGTTGCTTGTTGGTTCCCCAAAGGCAAAAGCATTGCCCAATCAGAGGTCAAAAATTACAGGAGGCTTGTACAACTGTGACATAAACATTCCTGGTCAGTCATGCCAGCGAGTAATGTTTGACAATGAAGAAAACCTGCAGACTGAAAATAAAGAGAACCAGTGGATGGGAGTTACTGTACAGAGCCAGGGTCCTGGTGGAAAGATATTgGTCTGTGCACATCGATACCAGCGGCGCTTATTTGTTGGCTCAGTTCAGGAACTGCGTGACTTGACAGGTCGGTGCTATGTACTTAGTGAGGATGTGACGATTAATGAGATCTCAGATGAAGATGGAGGGGATTGGATGTTCTGCAATGGGAGAAACAGAGGGCACGAGCGGTTTGGATCATGCCAGCAGGGCATGTCCGCCACATTCACAAAGGACTATCACTATCTGGTGTTTGGAGCACCAGGCGCTTACAACTGGAAAGGAATTGTGCGGTTGGAGCAGAAGAACACCTCTCTGTTTGATAAGGATATCTTTGATGACGGCCCATATGAAGTTGGAGATGAAAACCGACTTGATGCAGAACTGGTCCCTGTTCCTGCTAACAGTTATTTAGGTTTCTCTTTGGATTCTGGAAAAATGCTGACTAAGAGAGGTCAGTTGACCATAGTTGCTGGGGCTCCAAGAGCCAATCACAGTGGGGCAGTTGTGCTTTTAAAGAAGGATGAGGCTAAATCCTCCTTGTTGACGGCTGAGTACACCCTAGAGGGTAGTGGACTTGCCTCTTCCTTTGGTTATGACCTTGCAGTGCTTGACATCAATGGAGATGGGTGGCAAGACATTGTAGTTGGAGCACCTCAGTACTTCATTAAAGATGGTGATATTGGTGGAGCAATCTATGTTTACCTTAACGAGGAAGGAGCTTGGGACAAGATTACTCCAAAGAGAATTGATGGACCTGCTTATTCCATGTTTGGTTTGGCTGTGGAAAACATGGGAGATGTGAATCTGGATGGATATCAAGATGTTGCTGTTAGCGCCCCATATGACAGCAATGGAGCTGGAAACGTGATTATCTTCCACGGTTCACCACAAGGACTGAAAAAATCCCAGGTTCTTGGAGGAAAAGATCACAATGTGAAACTCTTTGGATACTCTCTTGCTGGGAACATGGATCTGGACAGAAATAATTACCCTGATCTGGCCATTGGATCTCTTTCTGATTCAGTGTTTGTGTACAGGTCGCGTTCCGTTATCAATATTGAAAAGACTGTCACCACCACACCGAAAGAGCTAGACCTCACTAAGAAAAACTGCAACAATGGAAACAATATATGCCTTGATGTGAAAGCCTGCTTCAAATTTTCTGTCAAACCCAAAACCTACAATCCAACTCTGAAGGTGGCATACACCATCAGGGTTGAATCTGAAAGGAAAAAACTAAATCTTCCTTCTAGAGTCATTTTTAATCCACGCTCAAACAATGATTATGAAAGCACTGGGATTGTGGAGCTCAAGGGTCAAGGCACAGAAAGCTGCATCTACAGAAATCTCATGCTGCAGGAAACCCTAAAAGACAAACTGAGAGGCATTCCTATTGAAGTGTCTGTGGAGATCctgaatcaaaacaaacgcaGGAGAAGACAGGCTGCTCTCCCTAACCTTCTTCCCATCCTGGACTCGAACCAAGAAGCCACCACTGTGGCcatgGTTCAATTTATCAAGGAAGGATGCGGTGCTGACCATCTGTGCCAAAGTGACCTGCAGCTACAGTATAAATTCCACACCAGGGAACCAAACAAAGACAACTTCTTTCCCTTTGACGAAGAAAAAGGAGTTCCTATCCTGTCTCTTAGCGATCAGAAGGAAATTGCCCTGGAGATTAAAGCAGTCAACCTGGGCGAAGATGCTTATGAAACACAGTTGACTGCCTCATTCCCCAAATCCCTCTCTTATTCTGCTGTTCGCACTCAGTCTGGTGATAAACAGATCAGCTGTTTAGTCAATCAGAATGGCTCACAAGCAGATTGTGACCTTGGAAATCCATTCAAAAAGGATGCTGAGacaacattttacattattttgagcACGGGAGGAATTTCTTTGGATACCACTGAAATTGAAATCGACCTTAAACTCAAAACGACAAGTGAACAGAAGCAATTGCAAGCAGTCAAAGCCAAAGCCATTGTTAAGATCCAGCTGCTGTTGTCCCTCTCAGGGGTAGCCAAGCCATCTCAGGTCTTCTTTACTGGAGAGGTTAAAGGAGAGAGTGCCATGAAGATGGCAGGTGATGTCGGAAGTCCAATTGACTATGAATTCAGGGTTACAAACTTGGGCAAACCCCTGAAGTCTTTCGGCAGGGCGTCTATGATCATCCAATGGCCAAAGCATAACTCTCAAGGCAAATGGCTGCTGTATCTTATGAAGATGACATCAACCGGCTTAGACAGCTTGAGCTGCACCAACTCAGATGAGGTCAACAAACTCGGTTTAAAGGAGCTTTCAGTGTCAAGAACTAAACGTGAAGTTGGGGAAACTTCAGCAGCAGAGGGAAAAACCGCCTTTTTTACAGATAAAAGGAAATACACACTTTTGTCATGTGATGATGGTGCGGAGTGTATAACTTTCATATGTCCTCTCACGGGAATGGACAGCAATGCTGTTATTAGTCTGCGTGCTTACCTTTGGAATGCCACTTTCCTGGAGGATTATGCAAAATTGAACTACGTTGATATTATTGCCAAAGCATCACTTGATTTCAAGACCACAGCTACAAATATACAGCTGAAGAATGAGCCATCTCAGGTACGCGTTACTGTATTTCCAGAACGCAAAGTAGCACAGTACGGCGGTATGCCCTGGTGGGTTATACTGGTGGCCATTTTACTTGGACTCCTCTTGCTGGGCTTACTGGTCTTCCTGCTTTGGAAGTGTGGATTTTTCAAACGTTCTAAGTATGATGACAGCGTGCCCAGTTATAATGCTGTGCGGATAAAGAGAGAAGAGAGGGACAATCTGTCAGGCAAAGACGAAATGGATTCTTCAGAGAAGAAACAATGGATGACTTCTTGGAATGAAAATGAGAGCTACTCATAGCTAAATGCTAACCTATTTGAAAGCAAACCCAAGACTCCCTTGCTGAGGTTTTAATGCTTACTTTTGCACACACTCAactctttttttctgttattattccATCAAATTGCAAAAGGAAACATTAGAGCTTTTACTTCGATGTATTGAGTTTCAAAGAttgtattttaaaagtgtgtCTAAAAGACACGATGAACGAGGATTTAAAAAGATTACTTGAGTTTCAAGAGAATTTGCTTTCATGTTCCGCCCCATTTCAATTTGCTTCTCATTCATACATGTGTATATACATCTAATGTATTTATTCTCAGCAGatatttctgttgaacaaaggccaaagattttacatttttgttttgttttatgaaaGACTTTGTGTGCGTCAAGACTGCTTGGTTTATACTTTTTTGATATCTAGCAAGAAAAAAAACTGCCTGGATGTATGTAAATAATTTTGTcgtttgattttttaaaaaatatttgtgttgcCTAATTGTTTAAACCAATCAGGTACATTTCATTTCATAGGTTTTTCACTGTACTTAAACTACTTCAACTGGGACAGATTTTAATGAGGAACTACTTTGTAATTATCAGATATTTGGTTTAATATCATTTGACCACTATCCTTAATCAGTTCAGCTTTTaggtgtttcttttattttttgaaggTCATTTGAAAATGTCTTTGTATAAATGTGAAGTTccttttatttttgaaaacagcACCTTTTGGCAGTGCAAATGCTTTTATGACAAAACGTTCATTCTTTTGTTTGTAAAGTGACACTGAATTGGACAGCGGTGattacaaatgtttttacaatttaaaaaatgtattaactcACATGAAATACACTGAAGTAAAgaaatagattattaaagattattttcatttttgaaataaACATTTTGCTGGCCC
>TCONS_00000630
attttacattattttgagcACGGGAGGAATTTCTTTGGATACCACTGAAATTGAAATCGACCTTAAACTCAAAACGACAAGTGAACAGAAGCAATTGCAAGCAGTCAAAGCCAAAGCCATTGTTAAGATCCAGCTGCTGTTGTCCCTCTCAGGGTAGGTTTGCTAACCGCTATCATTTTTTTGGTTTGTATTATCAATGTTCTATCTTTGTAACTTCAACTTTCATCATGTATTATCTGCAGGGTAGCCAAGCCATCTCAGGTCTTCTTTACTGGAGAGGTTAAAGGAGAGAGTGCCATGAAGATGGCAGGTGATGTCGGAAGTCCAATTGACTATGAATTCAGGGTGaatattacactgcaaaaaatgccctTTTTTGAACATAGATCTTACATTTAGTTAAAGcattataagaaaataaatgacgaGCCCGAGTCAGAATGAACCCAGAACATTCTTAAACTCAAtctttttatatagttttagtttACTGCATTTAGATGTAAAGGAAGTGGCTCCTTGGTGTGTTCTGGACGTTAATGCATTTCAAC
>TCONS_00000631
AAGGAGAGAGTGCCATGAAGATGGCAGGTGATGTCGGAAGTCCAATTGACTATGAATTCAGGGTTACAAACTTGGGCAAACCCCTGAAGTCTTTCGGCAGGGCGTCTATGATCATCCAATGGCCAAAGCATAACTCTCAAGGCAAATGGCTGCTGTATCTTATGAAGATGACATCAACCGGCTTAGACAGCTTGAGCTGCACCAACTCAGATGAGGTCAACAAACTCGGTTTAAAGGAGCTTTCAGTGTCAAGAACTAAACGTGAAGTTGGGGAAACTTCAGCAGCAGAGGGAAAAACCGCCTTTTTTACAGATAAAAGGAAATACACACTTTTGTCATGTGATGATGGTGCGGAGTGTATAACTTTCATATGTCCTCTCACGGGAATGGACAGCAATGCTGTTATTAGTCTGCGTGCTTACCTTTGGAATGCCACTTTCCTGGAGGATTATGCAAAATTGAACTACGTTGATATTATTGCCAAAGCATCACTTGATTTCAAGACCACAGCTACAAATATACAGCTGAAGAATGAGCCATCTCAGGTACGCGTTACTGTATTTCCAGAACGCAAAGTAGCACAGTACGGCGGTATGCCCTGGTGGGTTATACTGGTGGCCATTTTACTTGGACTCCTCTTGCTGGGCTTACTGGTCTTCCTGCTTTGGAAGTGTGGTTTTTTCGGCAAAAGTGGCAAAGAACCTGAAAAAGAGAGACTGACTTCAGATGCATAGAGAAACAGAGAACAAGAACCTCTCTCTTAGGTGTGGATTTTTCAAACGTTCTAAGTATGATGACAGCGTGCCCAGTTATAATGCTGTGCGGATAAAGAGAGAAGAGAGGGACAATCTGTCAGGCAAAGACGAAATGGATTCTTCAGAGAAGAAACAATGGATGACTTCTTGGAATGAAAATGAGAGC
>TCONS_00000632
TCAAGGAGCTTTCAGTGTCAAGAACTAAACGTGAAGTTGGGGAAACTTCAGCAGCAGAGGGAAAAACCGCCTTTTTTACAGATAAAAGGAAATACACACTTTTGTCATGTGATGATGGTGCGGAGTGTATAACTTTCATATGTCCTCTCACGGGAATGGACAGCAATGCTGTTATTAGTCTGCGTGCTTACCTTTGGAATGCCACTTTCCTGGAGGATTATGCAAAATTGAACTACGTTGATATTATTGCCAAAGCATCACTTGATTTCAAGACCACAGCTACAAATATACAGCTGAAGAATGAGCCATCTCAGGTACGCGTTACTGTATTTCCAGAACGCAAAGTAGCACAGTACGGCGGTATGCCCTGGTGGGTTATACTGGTGGCCATTTTACTTGGACTCCTCTTGCTGGGCTTACTGGTCTTCCTGCTTTGGAAGTGTGGTTTTTTCGGCAAAAGTGGCAAAGAACCTGAAAAAGAGAGACTGACTTCAGATGCATAGAGAAACAGAGAACAAGAACCTCTCTCTTAGGGTAAAAAAAACCCAACAACCTCAGATCAAGTCTGCCTGCGTGCTCAGAGCTAGCATGAAGAGTTGGATTAGCCCATGCTAACCCACTGTAGTCTGAAGCACATGCCTAGATTGTGGATTTTTCAAACGTTCTAAGTATGATGACAGCGTGCCCAGTTATAATGCTGTGCGGATAAAGAGAGAAGAGAGGGACAATCTGTCAGGCAAAGACGAAATGGATTCTTCAGAGAAGAAACAATGGATGACTTCTTGGAATGAAAATGAGAGCTACTCATAGCTAAATGCTAACCTATTTGAAAGCAAACCCAAGACTCCCTTGCTGAGGTTTTAATGCTTACTT

Function

symbol description
itga6b Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in myotome. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa and junctional epidermolysis bullosa with pyloric atresia. Orthologous to human ITGA6 (integrin subunit alpha 6).

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-5 Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in myotome. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa and junctional epidermolysis bullosa with pyloric atresia. Orthologous to human ITGA6 (integrin subunit alpha 6).

Ensembl:

ensembl_id ENSDARG00000069946

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000629 False 4254 mRNA 0.42 25 31019165 31064706
TCONS_00000630 False 551 lncRNA 0.38 2 31054415 31055182
TCONS_00000631 False 921 mRNA 0.44 8 31054915 31063778
TCONS_00000632 True 873 nonsense_mediated_decay 0.43 6 31057240 31063850

Neighbor

gene id symbol gene type direction distance location
XLOC_000366 metap1d coding upstream 45000 30946231 ~ 30974165 (+)
XLOC_000365 BX548015.2 coding upstream 159641 30853969 ~ 30859524 (+)
XLOC_000364 bora coding upstream 283687 30723380 ~ 30735478 (+)
XLOC_000363 gpr183b coding upstream 464192 30551777 ~ 30554973 (+)
XLOC_000362 tmem41ab coding upstream 581129 30422143 ~ 30438036 (+)
XLOC_000368 eef1a1l2 coding downstream 46111 31110817 ~ 31130222 (+)
XLOC_000369 NA coding downstream 76413 31141119 ~ 31144527 (+)
XLOC_000370 NA coding downstream 289879 31354585 ~ 31359319 (+)
XLOC_000371 CT573247.1 coding downstream 454533 31519239 ~ 31520972 (+)
XLOC_000372 slc2a15b coding downstream 508519 31573225 ~ 31598417 (+)
XLOC_000361 BX255890.2 non-coding upstream 791660 30227391 ~ 30227505 (+)
XLOC_000360 dre-mir-740 non-coding upstream 853100 30165953 ~ 30166065 (+)
XLOC_000358 NA non-coding upstream 939636 30074635 ~ 30079529 (+)
XLOC_000350 CR774189.1 non-coding upstream 1510692 29507647 ~ 29508473 (+)
XLOC_000380 NA non-coding downstream 945556 32010262 ~ 32011794 (+)
XLOC_000381 NA non-coding downstream 947174 32011880 ~ 32012378 (+)

Expression


Co-expression Network