XLOC_000372 (slc2a15b)


Basic Information

Item Value
gene id XLOC_000372
gene name slc2a15b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31573225 ~ 31598417 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000638
ATAAATCAGCACGCCTCCTTTCTGAAAATAACTTGCGCGGGGATGCCGCCGCTATAAAgttttaagggaaaaaaacaatagtctCTCTCATTCGAGTTTTAGTCAAAGAGCTGCTTGCCTTAGCTCATAGATGGCGGAGGAGGTTTTGATAGATCCAGGGAAAACCAGAGGGCATCTAACCTCATCCCTGTTGGCAGTAGCATTTCTGTCTTCTTTCGGGAGCTCCATGCTCTATGGTTATAACTTGGCTGTGGTTAATTCTCCCTCACAGTACATAAAGGACTTTTTTAATCAAACCATTGTGAGGCGGCATGGGTCAGGAGTGGATGAAGAGACTCTCACACTTATGTATTCATTCACTGTGTCTATATTTGCCATTGGAGGGTTGGTGGGTTCCCTGACAGTGAGGATGCAGGTCACCAGATTTGGAAGGAAAGGGACACTGGTACACAGCACAGTTTTGGTGTTTATCGCTGGCGTTCTGATGGGCTTCAGCCGGTTATGTGGATCTCCAGAGATGATCATTGTTGGGCGCTTCATCACAGGGATACATTCAGGAATAGCTCTCAGTGTGGTGCCCATGTATCTGGGAGAAATTGCCCCAAAGAATCTTCGGGGTTTTCTGGGACTCGTACCCAGCATCTTCATTTGTATCGGAGTGTTTATTGCACAGATTCTGGGACTTCATGAGCTGTTGGGCAAGGAAGAGCATTGGCCTCTTTTCTTCTCTCTAGTCGTGGTTCCTACATTTATACAGCTCATGTTATTGCCATGGTTCCCGGAGAGTCCAAGATACCTGTTGATAGAAAAGAGGAACATCCATGCCACTATCACAGCACTGAAGTGGTATCGTGCTAAGGGTAACATCCAGGCTGAGGTGGAGGAGATGCAGGAGGAACAGCGCTCTTTATCCTCAGTGGAGACTGTGTCAGTCTTGCAGCTCTTCAGGGATCCGTCTGTTCGCTGGCAGCTTGTCACAGTCATTGTTGTCAATGCTGGGATGCAGCTGTCTGGAATCGATGCGATCTGGTTCTACACTAATGACATCTTTGAGAACGCTGGCATTCCTTTTGATCAGATTCAGTACACAACTGTAGGCACTGGAGCCATTGAGGTCATCGCTGGGCTCATAGGGTGTTTTGCTATCGAGCGAGTGGGTAGAAGGCCCTTGATGATTGGTGGTTTCACTTTCATGGGTCTGTGCTGTGCTGGAATCACCTTCTCTCTCTTATTAGAGGCTCATTTATCCTTCATGCGGTACATCAGTGTGGCCTGTGTGGTGGGAATCATCGCTGGATTCTGCATAGGGCCTGCTGGTGTCCCGTTCCTCATGACAGGAGAACTCTTTAAACAATCCTATCGACCCTCTGCCTACATTGTAGGAGGATCTCTCAACTGGATATCAAACTTCGCTGTAGGATTTGTCTTTCCATTCCTTCAGatgtcagcTGGTGCGTTCTGTTACCTGGtgttttgtggtgtgtgtgtcGGTGTGGCAGCCTACGTCTTCTTCATCATCCCTGAAACGAAGAACAAAACCTTCTTGGAGATCAGTGAGCTGTTCGCCTTAAGAAATGCTTGTGAAATTGAAAACCAGTCGCTGGTAACCAGTGCCCAACTCGCTCTCAAAAAGATGAATGGTTATGGAGCACTGGTAACTGTAGTAGATGTGGACAAAAAGGAGAAGACAGAGACATAATAGTGAAGAAAGAGGGGAGTATTGCTTCAATGAGGACCAGAATTGACAGCATATATACAGGctctaatttaatattttatttaaaaaataataataataagtgcagaCTGCTATGGTTGAATGCAATATAACTATCAGACTGAACATGATCAAACATTgctattaaaaaaagattaaataaaggtTTGTCTTTTGATTTGATGGACTATT

Function

symbol description
slc2a15b Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including heart; integument; kidney; liver; and muscle.

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050508-1 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including heart; integument; kidney; liver; and muscle.

Ensembl:

ensembl_id ENSDARG00000053269

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000638 True 1909 mRNA 0.45 12 31573225 31598417

Neighbor

gene id symbol gene type direction distance location
XLOC_000371 CT573247.1 coding upstream 52253 31519239 ~ 31520972 (+)
XLOC_000370 NA coding upstream 213906 31354585 ~ 31359319 (+)
XLOC_000369 NA coding upstream 428698 31141119 ~ 31144527 (+)
XLOC_000368 eef1a1l2 coding upstream 443003 31110817 ~ 31130222 (+)
XLOC_000367 itga6b coding upstream 508519 31019165 ~ 31064706 (+)
XLOC_000373 fgf8b coding downstream 39857 31638274 ~ 31669901 (+)
XLOC_000374 poll coding downstream 59425 31657842 ~ 31672343 (+)
XLOC_000375 wbp1lb coding downstream 75880 31674297 ~ 31699955 (+)
XLOC_000376 as3mt coding downstream 108251 31706668 ~ 31722875 (+)
XLOC_000377 cnnm2b coding downstream 126737 31725154 ~ 31799359 (+)
XLOC_000365 BX548015.2 non-coding upstream 713701 30853969 ~ 30859524 (+)
XLOC_000361 BX255890.2 non-coding upstream 1345720 30227391 ~ 30227505 (+)
XLOC_000380 NA non-coding downstream 411845 32010262 ~ 32011794 (+)
XLOC_000381 NA non-coding downstream 413463 32011880 ~ 32012378 (+)
XLOC_000383 BX901898.1 non-coding downstream 419020 32017437 ~ 32018115 (+)
XLOC_000386 CU462859.1 non-coding downstream 915572 32513989 ~ 32514104 (+)
XLOC_000388 CU915272.1 non-coding downstream 1107692 32706109 ~ 32706227 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_01806674_01816408 SLC2A15B coding CI01000049 null 1806674 ~ 1816536 (+)
bowfin (Amia calva) AMCG00003342 slc2a15a,LOC107716293,LOC107673883,LOC107696166,LOC107708408,LOC108442702,LOC103035008,LOC107585370 coding CM030139.1 CM030139.1 19995019 ~ 20005313 (-)