RNA id: TCONS_00000638


Basic Information

Item Value
RNA id TCONS_00000638
length 1909
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_000372
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31573225 ~ 31598417 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAATCAGCACGCCTCCTTTCTGAAAATAACTTGCGCGGGGATGCCGCCGCTATAAAgttttaagggaaaaaaacaatagtctCTCTCATTCGAGTTTTAGTCAAAGAGCTGCTTGCCTTAGCTCATAGATGGCGGAGGAGGTTTTGATAGATCCAGGGAAAACCAGAGGGCATCTAACCTCATCCCTGTTGGCAGTAGCATTTCTGTCTTCTTTCGGGAGCTCCATGCTCTATGGTTATAACTTGGCTGTGGTTAATTCTCCCTCACAGTACATAAAGGACTTTTTTAATCAAACCATTGTGAGGCGGCATGGGTCAGGAGTGGATGAAGAGACTCTCACACTTATGTATTCATTCACTGTGTCTATATTTGCCATTGGAGGGTTGGTGGGTTCCCTGACAGTGAGGATGCAGGTCACCAGATTTGGAAGGAAAGGGACACTGGTACACAGCACAGTTTTGGTGTTTATCGCTGGCGTTCTGATGGGCTTCAGCCGGTTATGTGGATCTCCAGAGATGATCATTGTTGGGCGCTTCATCACAGGGATACATTCAGGAATAGCTCTCAGTGTGGTGCCCATGTATCTGGGAGAAATTGCCCCAAAGAATCTTCGGGGTTTTCTGGGACTCGTACCCAGCATCTTCATTTGTATCGGAGTGTTTATTGCACAGATTCTGGGACTTCATGAGCTGTTGGGCAAGGAAGAGCATTGGCCTCTTTTCTTCTCTCTAGTCGTGGTTCCTACATTTATACAGCTCATGTTATTGCCATGGTTCCCGGAGAGTCCAAGATACCTGTTGATAGAAAAGAGGAACATCCATGCCACTATCACAGCACTGAAGTGGTATCGTGCTAAGGGTAACATCCAGGCTGAGGTGGAGGAGATGCAGGAGGAACAGCGCTCTTTATCCTCAGTGGAGACTGTGTCAGTCTTGCAGCTCTTCAGGGATCCGTCTGTTCGCTGGCAGCTTGTCACAGTCATTGTTGTCAATGCTGGGATGCAGCTGTCTGGAATCGATGCGATCTGGTTCTACACTAATGACATCTTTGAGAACGCTGGCATTCCTTTTGATCAGATTCAGTACACAACTGTAGGCACTGGAGCCATTGAGGTCATCGCTGGGCTCATAGGGTGTTTTGCTATCGAGCGAGTGGGTAGAAGGCCCTTGATGATTGGTGGTTTCACTTTCATGGGTCTGTGCTGTGCTGGAATCACCTTCTCTCTCTTATTAGAGGCTCATTTATCCTTCATGCGGTACATCAGTGTGGCCTGTGTGGTGGGAATCATCGCTGGATTCTGCATAGGGCCTGCTGGTGTCCCGTTCCTCATGACAGGAGAACTCTTTAAACAATCCTATCGACCCTCTGCCTACATTGTAGGAGGATCTCTCAACTGGATATCAAACTTCGCTGTAGGATTTGTCTTTCCATTCCTTCAGatgtcagcTGGTGCGTTCTGTTACCTGGtgttttgtggtgtgtgtgtcGGTGTGGCAGCCTACGTCTTCTTCATCATCCCTGAAACGAAGAACAAAACCTTCTTGGAGATCAGTGAGCTGTTCGCCTTAAGAAATGCTTGTGAAATTGAAAACCAGTCGCTGGTAACCAGTGCCCAACTCGCTCTCAAAAAGATGAATGGTTATGGAGCACTGGTAACTGTAGTAGATGTGGACAAAAAGGAGAAGACAGAGACATAATAGTGAAGAAAGAGGGGAGTATTGCTTCAATGAGGACCAGAATTGACAGCATATATACAGGctctaatttaatattttatttaaaaaataataataataagtgcagaCTGCTATGGTTGAATGCAATATAACTATCAGACTGAACATGATCAAACATTgctattaaaaaaagattaaataaaggtTTGTCTTTTGATTTGATGGACTATT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050508-1 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including heart; integument; kidney; liver; and muscle.

Ensembl:

ensembl_id ENSDART00000075286

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000637 lncRNA upstream 52253 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002847 lncRNA upstream 213906 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA upstream 213906 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA upstream 213906 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00003082 lncRNA upstream 428698 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00003083 lncRNA downstream 411845 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00002849 lncRNA downstream 413463 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00000651 lncRNA downstream 419020 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002850 lncRNA downstream 1919385 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 2098924 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00000633 mRNA upstream 443003 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA upstream 443003 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000635 mRNA upstream 443621 31113951 ~ 31129604 (+) True XLOC_000368
TCONS_00000629 mRNA upstream 508519 31019165 ~ 31064706 (+) False XLOC_000367
TCONS_00000631 mRNA upstream 509447 31054915 ~ 31063778 (+) False XLOC_000367
TCONS_00000639 mRNA downstream 39857 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000640 mRNA downstream 44806 31643223 ~ 31669901 (+) True XLOC_000373
TCONS_00000641 mRNA downstream 59425 31657842 ~ 31672343 (+) False XLOC_000374
TCONS_00000642 mRNA downstream 59594 31658011 ~ 31672027 (+) True XLOC_000374
TCONS_00000643 mRNA downstream 75880 31674297 ~ 31699955 (+) True XLOC_000375
TCONS_00000632 other upstream 509375 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 608221 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 1345720 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 1407160 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1712852 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000645 other downstream 108252 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 453196 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 915572 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1107692 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 1616824 33215241 ~ 33216718 (+) False XLOC_000390

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_01806674_01816408.mRNA True 1550 mRNA 0.47 11 CI01000049 1806674 ~ 1816536 (+)
bowfin (Amia calva) AMCG00003342 True 1524 mRNA 0.56 11 CM030139.1 19995019 ~ 20005313 (-)