RNA id: TCONS_00000645


Basic Information

Item Value
RNA id TCONS_00000645
length 1554
RNA type processed_transcript
GC content 0.44
exon number 10
gene id XLOC_000376
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31706668 ~ 31722875 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGCCAGCGTTTGACCATGGCAGACGCAGCCAGGTAGATcggacttaaaataaaaataaacttgttgCTGCTCGGTTTTTGAACAAATggaaacaaataacaataattttaagTAACATATATCTGCAGTGTCATTACAGCTGATAAAGTTACCGAGGTTTCATTCTGAGACTACAAAACTGTTGTCGATATAGCTAACGTTACAAAAGTGAAAGTGAGTCTATTCTGCACTAAACAAAGTCGTTCCAAGTAACGTTACGTTTATTTGTTGTATAATTTCTTGTTCAAAGGGACAGGACTGTAACAAGTGTCTACAATGACGTTAAGGAATACTACGGAAAGACGTTGAAGCAGAAATCAGACCTGAAAAGCAATGCCTGTGTGCCTTCTGCCAAACCTGTCTCTGCGTATGTGAGAAAAGTGATAGCTGAGATCCATCCAGATGTTGTTGCAAAGTACTATGGCTGTGGTCTGGTGGTCCCAGAGTGTCTGGAGGGCTGCCGTGTGCTTGACCTTGGCTGTGGAAGTGGACGTGACTGCTACATGCTCAGCCAGCTTGTAGGAGAGAAAGGGCACGTCACAGGTATCGACATGACAGAAGCTCAGCTTGAGGTAGCCCGGAATTACATCGACTACCACATGCAAAGATTTGGTTATAAAAATCCAAATGTGAATTTTGTTCAAGGCTACATTGAGGCCTTGGTGGAAGCCGGGCTGGAGGATAAATCATATGATATTATCATATCAAATTGTGTGGTGAATCTGTCACCAGATAAATCCAGTGTTCTGAGGGAGGCGTATCGTGTTCTGAAGgACGGAGGGGAATTGTACTTTAGTGATGTCTATAGTGATGCTAGAATCCCAGAACACCTCAAGGCCAACAAAACTTTATGGGGCGAGTGCCTCAGTGGAGCATTGTGGTGGGAAGACCTGATAAGACTAGCTGAAGAGGTTGGGTTCTGCAAACCCAGGCTGGTTTCTGCTAGCATCATCACAGTGGGCAACACGGAACTGGAAAGCATTCTTGGTGACTACAAATTTGTGTCTGCCACATACCGACTCTTCAAGTTACAGAAAGGTTTGGAGAAGAAGCCCTGTCTGGTCATGTACAATGGAGACATTACTGACAGCGAGGAAAGCTTTGAGTTTGATGCCCAGTATGCCTTTAAGGTGGATAAAGTGATGGAGGTGGATGGAGATGTCGCCAACATCTTGAGAAACTCCAGATTTTCTGAAGAATTCACATTTCAGCCTCAGGGGGTGAATACTGCTTCTTCTGCAGGATGCTGGGCCAAACCCAACGCTGTGTCAGTGAATCCCTTTGAACTGGTCCAACAGTTGGGAAGCGCAAGTGTGTCTCCTTCCACTGGAGGGTGCTGTGCAGGTCAGGAATCATGCTGTAACTGACTTCCAGCTATTTTGAAGGCAGTTGAGAAATGAAGCAAGTGTTTCTTATGTATTATGTAATAAAAATCACAACAAAAATGGTAATATAGCAGTACTTTGTAAGGTTGTCAAGCTAATAAATGTATAGAAATGTCCAATACACCAAA

Function

GO:

id name namespace
GO:0009404 toxin metabolic process biological_process
GO:0018872 arsonoacetate metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0030791 arsenite methyltransferase activity molecular_function
GO:0030792 methylarsonite methyltransferase activity molecular_function

KEGG:

id description
ko05208 Chemical carcinogenesis - reactive oxygen species

ZFIN:

id description
ZDB-GENE-060312-15 Predicted to enable arsenite methyltransferase activity and methylarsonite methyltransferase activity. Predicted to be involved in arsonoacetate metabolic process and toxin metabolic process. Predicted to be active in cytosol. Is expressed in liver. Orthologous to human AS3MT (arsenite methyltransferase).

Ensembl:

ensembl_id ENSDART00000144957

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000637 lncRNA upstream 185697 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002847 lncRNA upstream 347350 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA upstream 347350 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA upstream 347350 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00003082 lncRNA upstream 562142 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00003083 lncRNA downstream 287387 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00002849 lncRNA downstream 289005 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00000651 lncRNA downstream 294562 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002850 lncRNA downstream 1794927 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 1974466 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00000643 mRNA upstream 6714 31674297 ~ 31699955 (+) True XLOC_000375
TCONS_00000641 mRNA upstream 34326 31657842 ~ 31672343 (+) False XLOC_000374
TCONS_00000642 mRNA upstream 34642 31658011 ~ 31672027 (+) True XLOC_000374
TCONS_00000640 mRNA upstream 36768 31643223 ~ 31669901 (+) True XLOC_000373
TCONS_00000639 mRNA upstream 63167 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000646 mRNA downstream 2279 31725154 ~ 31799359 (+) False XLOC_000377
TCONS_00000647 mRNA downstream 2426 31725301 ~ 31779857 (+) True XLOC_000377
TCONS_00000648 mRNA downstream 141529 31864404 ~ 31867717 (+) True XLOC_000378
TCONS_00000649 mRNA downstream 220086 31942961 ~ 31979510 (+) True XLOC_000379
TCONS_00000650 mRNA downstream 290813 32013688 ~ 32014487 (+) True XLOC_000382
TCONS_00000632 other upstream 642819 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 741665 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 1479164 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 1540604 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1846296 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000653 other downstream 328738 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 791114 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 983234 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 1492366 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other downstream 1492368 33215243 ~ 33216083 (+) True XLOC_000390

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_01887038_01898993.mRNA True 1463 mRNA 0.45 10 CI01000049 1887038 ~ 1899133 (+)