RNA id: TCONS_00000647


Basic Information

Item Value
RNA id TCONS_00000647
length 2351
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_000377
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31725154 ~ 31799359 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGAACCGTCGGTTCCAGTACCCCCTCGAAAAATGGCGTCACTCAGCCGGGTCCGAGCCTTTACTCTGATTTTCTTAACTGCAAGCAGTTGTTTAATTACTCCCACAAGTGGCAAGGAAGGAGGGGGAGAGGAGACGGTCATCATCGGGCTGCGGCTGGAGGACACGGACGACATTTCCTTCATGGACAGGGGCTTTTTGCGGGTCAGCGAGAGGTCTCGGGTGAGATTGAGGGTGTACGGGCAAAACATCAACAACGAGACTTGGTCCAAAATCGCATTTACGGAGCACGAGAGGAGCCGAGTGATCGGCAACATCGACAGCTCTTCGGGGGACAACCAGAGTCAGGAGGACACGTCGGGCTTGCACCCCTGCGGCATCAGAACTTCGGATATTCTGATCTTGCCCAACATCGTTTTAAACCGCAAGACGTCTGGCACCGTGGAGATAGAGGTCAAACCTCTGCGAAAGACTGAGCGGAGCAAAGCGTACTACCTGTGCATCGCCACCTCCACACCTGCTGTGGCCGGAGCGCACGACCCGTGGACCGAGAACACGTGGATCTATCACGATGGAGAGGACACCAAAGTGATCGTGGTGGAGGAGAAAAAGTTCCTGCTGCCCTTCTGGCTCCAGGTCATCTTCATTTCTATGCTGCTCTGCCTCTCGGGCATGTTCAGCGGCTTGAACTTGGGGCTGATGGCGCTGGACCCCATGGAGCTGCAGATCGTCCAGAACTGCGGGACGGAGAAGGAGAAGAACTACGCGAGGAAAATCGAGCCCGTGAGGAGCCAGGGGAACTACCTGCTCTGCTCGCTTCTTCTGGGCAATGTTCTGGTCAACACCACCTTGACTATTCTGCTGGATGACATCGCCGGCTCTGGATTGATAGCTGTAGTGATGTCCACCATCGGCATCGTGATATTTGGGGAGATTGTGCCCCAAGCCATATGCTCACGACACGGTCTCGCTGTGGGTGCGAATACAATCTTCTTGACCAAATTCTTCATGCTGCTCACTTTCCCCGCGTCCTATCCGGTAAGTAAGCTGCTCGATTATCTCCTCGGGCAGGAGATCGGCACGGTGTACAACCGGGAGAAGCTCTTGGAGATGTTGAGGGTCACGGACCCGTATAATGACTTGGTGAAAGAGGAGCTGAACATCATCCAGGGCGCGCTGGAGCTAAGGACTAAGACAGTGGAAGATGTGATGACCCCGCTACGCGACTGCTTCATGATCACCGGGGACGCGACGCTTGACTTCAACAGCATGAGTGAGATCATGGAGAGCGGCTACACGCGCATTCCGGTGTTCGAGGGCGACAGGTCCAACATCGTGGACCTGCTGTTCGTCAAGGACCTGGCCTTTGTGGATCCCGACGACTGCACCCCGCTGAAGACGATAACCAAGTTCTACAGCCATCCGTTGCATTTCGTCTTCAATGACACCAAACTCGACGCGATGCTGGAGGAGTTCAAGAAAGGTAAATCTCACTTGGCAATAGTCCAGCGGGTCAACAACGAAGGAGAAGGTGATCCATTCTATGAAGTGCTTGGCATCGTCACCCTGGAGGACGTCATTGAAGAAATCATCAAGTCTGAAATCCTGGATGAGACAGACTTATATAGTATGTGCCATGAACGTCTtgtatttttgcatgtttttgtatttttattaaagaaatgGAGCTTAAACAGTacatgtaaaattataaaaaattgcaCTACTGTATAAGGGATGCTTCATTAATGTTTGAACTAAATATTTATTATCAAGTAGTCACCAGGAATAGTTTATGACAAACAAAACGTGTCATCTATGTGTTTCAAAAGCTATGCCACTTTACATTTCTAATATATGTTTTTTCCTGAATAGTGCACAGATTCAAATCATGCAGACTATAAAGGCccgggtatacttgaaacaaagTTCTTTTTTGTTATTCGTTTAAGATCAAGAAGAAAAGGCTTGTAATGGTATACTGTTTTTGAATCTTCCAAAACAGAACCAAATATACTCAAGCCTCCAGTCTGTTCATGTTgctaactttattttgatggtccatttgagtattagtagactgcttaatatctgttgatactgatccttcaacagacatttaactaactttaagacactttgcaagtacatgtcaacatgcactaactctaaccccaacctaacagtctacttgcaatgtaatgagaattagttggcatgtagatgcaatgtagccTTATATTCAACATACAGgccaccatcaaaataaagtttgacctAAATACATCCCTCAATCACATTCTCGTCTCGCTTTTTTATTAGTCAAtgaaaatgtcagtatattttgT

Function

GO:

id name namespace
GO:0010960 magnesium ion homeostasis biological_process
GO:0007420 brain development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-26 Acts upstream of or within brain development and magnesium ion homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; opercular flap; pleuroperitoneal region; and scale. Used to study schizophrenia. Human ortholog(s) of this gene implicated in renal hypomagnesemia 6. Orthologous to human CNNM2 (cyclin and CBS domain divalent metal cation transport mediator 2).

Ensembl:

ensembl_id ENSDART00000189801

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000637 lncRNA upstream 204329 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002847 lncRNA upstream 365982 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA upstream 365982 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA upstream 365982 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00000636 lncRNA upstream 580774 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00003083 lncRNA downstream 230405 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00002849 lncRNA downstream 232023 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00000651 lncRNA downstream 237580 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002850 lncRNA downstream 1737945 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 1917484 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00000644 mRNA upstream 2426 31706668 ~ 31722875 (+) False XLOC_000376
TCONS_00000643 mRNA upstream 25346 31674297 ~ 31699955 (+) True XLOC_000375
TCONS_00000641 mRNA upstream 52958 31657842 ~ 31672343 (+) False XLOC_000374
TCONS_00000642 mRNA upstream 53274 31658011 ~ 31672027 (+) True XLOC_000374
TCONS_00000640 mRNA upstream 55400 31643223 ~ 31669901 (+) True XLOC_000373
TCONS_00000648 mRNA downstream 84547 31864404 ~ 31867717 (+) True XLOC_000378
TCONS_00000649 mRNA downstream 163104 31942961 ~ 31979510 (+) True XLOC_000379
TCONS_00000650 mRNA downstream 233831 32013688 ~ 32014487 (+) True XLOC_000382
TCONS_00000652 mRNA downstream 271724 32051581 ~ 32077473 (+) False XLOC_000384
TCONS_00000654 mRNA downstream 274302 32054159 ~ 32074141 (+) True XLOC_000384
TCONS_00000645 other upstream 2426 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000632 other upstream 661451 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 760297 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 1497796 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 1559236 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000653 other downstream 271756 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 734132 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 926252 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 1435384 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other downstream 1435386 33215243 ~ 33216083 (+) True XLOC_000390

Expression Profile

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