RNA id: TCONS_00000654


Basic Information

Item Value
RNA id TCONS_00000654
length 1847
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_000384
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 32051581 ~ 32077473 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCACTGAAAacaaatattcattggatttactaaacaGTTTTAtgtgctaaatttaaacaaacaaattaaaattaacttacttaattttatttgttttaattcaaccCATATACATTCCTTGCAACCAGTTACTTCAAAGAAAagttgtaaatccaatgaatcatatACTTTTTAAGTCTACAAACATGTGAAAATGTTAGgaaaacctacaaaatttctgATTTTCCATATCAGGGCATGCAAAAATTATCTGATAATTAGCAATAAAACCTCAGGTGAACAACAACATAAAAGTAAGTTAGGCACAACTTACTAAAATACCATGTGCAACACAGATCAGAATGTCTGTTCATCAGCTAATGTTGTAGCAGTTTGTTGGTCTGGAGCTGCATGTTAACACCAAGCCCATCCCGTAGCTAAAACTTAGCCAAAAGTGGGTCATGCAACAAGACAATGCCAAGCACACCAGCAAATCTACAACGGAACCACTGGGGAGAAAAATGGTGTTGCAATAGTTCAGTCCAAAGCTGATCTTTTCCTTGCTTTGGCAATACTGggcagaaagcaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaagaaaactcacCAGAATGAACTGAGAGACTGATGAGATTATACAGAAATTGATTAAAGTATTGCTACGAAAACTGGATCTGCTACAGGCATCCGAATCAGTGGGTGTCCTAAGTTTCGCTTTACTTCTGTTAGTAAATACTGACACTTTTATGATGTTGTTCATCTGAGTATTTACTTTCTAAATTGTAAGATCAATACAATATTTTAGCAATGATTTTTTTAGTTCATGTGcagcataatttatttatttttttaaatgctaaaggTATGGCAGCACATGGCCATATGGGAGTGTTTCTCTTTTCTGCATCGTCAGGAGGTCTTCCACAAGAGGAAATCACCTTTGCCAAGGCTGTCAAGGTGCAAGGTTATTCCACCGCTGTAATTGggaaatGGCACCTTGGTCTTAACTGTGAAGACAGTTCTGACCACTGCCACCATCCAAACTCACATGGCTTCGACTACTTCTATGGTACCATTATGACGCACCTTCGGGACTGCCAGCCTGGACATGGCTCTGTCTTGTATAACGTTTATAGTCACATCCCATTCAAGCCCCTTAGTATCGGTTTAGTTTCCCTAGTAGTACTCCATATTAGAGGGATGCTAACTGTGAGCAGGAGGGTATTTTTCAGTTTTCTGATCCTGGTAGGGCTGGTGCTGAGTCTCTTTCGTTTGTTAGTATACACATTCCCCAATCTAAATTGCTTTGTCATGAGAGGAACGGAAATTGTGGAACAACCATATATCTCAGAAAACCTCACACAAAGGATGACCAGTGAAGCCATAGAGTTTCTGGAAAGGAATTCAGAGACCCCATTCTTGCTCTTCTTCTCATTTATTCAAGTCCACACAGGAGTTTTTGCCTCTCCTCTCTTCAGGGGAAGGAGCCAACATGGCCTCTATGGTGATGCTGTCATGGAAGTAGACTGGAGTGTAGgTCAGATCATGCAGACTCTGGAGCGCTTAAACTTGAAGGACAACACTCTAGTGTACATGACCTCAGATCAGGGGCCTCACCTGGAAGAGATTTCAGTCCACGGAGAGATGCATGGGGGCTATAGCGGCATATACAAAGCTGGCAAGTCAACTAACTGGGAAGGAGGAATCCGAATTCCGGGCATTCTTAGTTGGCCAGGTGTCTTACCCGCCGGGAATATCATCGATGAGCCCACTAGTAACATGGATATTTTCCCTACGGTCTTGAATTTAGCTGGTGCTTCCATACCCGATGACAGGTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004773 steryl-sulfatase activity molecular_function
GO:0008484 sulfuric ester hydrolase activity molecular_function
GO:0004065 arylsulfatase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
ko01009 Protein phosphatases and associated proteins
ko01008 Polyketide biosynthesis proteins

ZFIN:

id description
ZDB-GENE-030717-5 Enables steryl-sulfatase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in X-linked ichthyosis. Orthologous to human STS (steroid sulfatase).

Ensembl:

ensembl_id ENSDART00000181442

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000651 lncRNA upstream 36044 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002849 lncRNA upstream 41781 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00003083 lncRNA upstream 42365 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00000637 lncRNA upstream 533187 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002848 lncRNA upstream 694840 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00002850 lncRNA downstream 1443661 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 1623200 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00003084 lncRNA downstream 2157462 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA downstream 2157597 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00003085 lncRNA downstream 2376518 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00000650 mRNA upstream 39672 32013688 ~ 32014487 (+) True XLOC_000382
TCONS_00000649 mRNA upstream 74649 31942961 ~ 31979510 (+) True XLOC_000379
TCONS_00000648 mRNA upstream 186442 31864404 ~ 31867717 (+) True XLOC_000378
TCONS_00000646 mRNA upstream 254800 31725154 ~ 31799359 (+) False XLOC_000377
TCONS_00000655 mRNA downstream 267343 32341484 ~ 32385665 (+) False XLOC_000385
TCONS_00000656 mRNA downstream 267593 32341734 ~ 32342951 (+) True XLOC_000385
TCONS_00000658 mRNA downstream 447328 32521469 ~ 32693950 (+) False XLOC_000387
TCONS_00000659 mRNA downstream 447438 32521579 ~ 32693355 (+) False XLOC_000387
TCONS_00000660 mRNA downstream 453956 32528097 ~ 32691706 (+) True XLOC_000387
TCONS_00000645 other upstream 331284 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000632 other upstream 990309 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 1089155 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 1826654 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 1888094 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000657 other downstream 439848 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 631968 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 1141100 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other downstream 1141102 33215243 ~ 33216083 (+) True XLOC_000390
TCONS_00000675 other downstream 1327717 33401858 ~ 33455232 (+) True XLOC_000393

Expression Profile

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