XLOC_000408


Basic Information

Item Value
gene id XLOC_000408
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34450659 ~ 34454447 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003085
GCCACGCCCCCTGCTGCTATATAAAAAGTGTCGGAGAGGATTCGCGGGCTTTAGCCACATTGACCAGCAGATGGAGACAAATATCACTTCAAAAACGTTGCTGTTTGTTAACTGTCCAAGTCAGCAGTCAACAAGACAGTAACTAACACAGAGATGCTTTCAACAGCTGGAACTAAAACAGGAAGTGCTTCATCCAGCGACAGGAAGTCCTAACCAAAGCTGGAGCAATGTACAAGTCTGTCTGCCCACTGGTTTCCTGTGTGACTAGTCTGCTGTGAGACAAACTAACACTTTATCACACTATTGTTGTCATCTGATGAGCCTAAAGACAGCAGTTTAGGTTTCAAAGCATGTTTGCACAGGATGTTGGTGAGTGGTGTCCTTTGCTGTTAATTTGTAAGCTTTGAGGGTGTTGCTTCAGTGATGAGGAAATGCAAAATGCTCAGATCTATTTAAATGGACTTTGCTGACTAATAAATGGGTTgtactttaaataaatcaaaattacctGAAGTGTGCTCTCGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003085 True 526 lncRNA 0.43 2 34450659 34454447

Neighbor

gene id symbol gene type direction distance location
XLOC_000407 CR848003.1 coding upstream 50305 34400240 ~ 34400354 (+)
XLOC_000406 kctd12.2 coding upstream 153256 34295925 ~ 34297403 (+)
XLOC_000405 slc5a7a coding upstream 188666 34243650 ~ 34261993 (+)
XLOC_000404 arl6 coding upstream 216603 34203817 ~ 34234056 (+)
XLOC_000402 epha6 coding upstream 249464 33969015 ~ 34201195 (+)
XLOC_000409 klf12a coding downstream 42408 34496855 ~ 34558804 (+)
XLOC_000410 gpalpp1 coding downstream 230958 34685405 ~ 34694365 (+)
XLOC_000411 gtf2f2a coding downstream 240926 34695373 ~ 34706903 (+)
XLOC_000412 CR339054.7 coding downstream 242056 34696503 ~ 34727517 (+)
XLOC_000413 zgc:172122 coding downstream 309092 34763539 ~ 34807059 (+)
XLOC_000403 dre-mir-734 non-coding upstream 327687 34122880 ~ 34122972 (+)
XLOC_000401 CT573012.1 non-coding upstream 483386 33967157 ~ 33967273 (+)
XLOC_000400 CU915566.1 non-coding upstream 715525 33735018 ~ 33735134 (+)
XLOC_000394 NA non-coding upstream 931836 33517802 ~ 33518823 (+)
XLOC_000414 NA non-coding downstream 402921 34857368 ~ 34861057 (+)
XLOC_000415 NA non-coding downstream 579847 35034294 ~ 35093512 (+)
XLOC_000421 NA non-coding downstream 1441945 35896392 ~ 35898437 (+)
XLOC_000425 BX324156.1 non-coding downstream 1699814 36154261 ~ 36154377 (+)
XLOC_000431 NA non-coding downstream 2511553 36966000 ~ 36966282 (+)

Expression


Co-expression Network