RNA id: TCONS_00000637


Basic Information

Item Value
RNA id TCONS_00000637
length 846
lncRNA type lincRNA
GC content 0.38
exon number 6
gene id XLOC_000371
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31519239 ~ 31520972 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAGTTAAATTTTTAGAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCGTTGTGAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGGGgCCACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGATTTGACTGTCCTGCAGCAAGGGGCTGTTGAAGTGCCCTCCTCCCCAAGTCTGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTGtccaaaaaaatAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTAAGGAGtatgacaagatatttttttgctgcttttgaTTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTTACTAAGCCATTGGTTTTAGTTGGCACTAGCTGCTAACATAtattaattgtaaatgttttgctGTTAGATTTAATGCTTTGATGACAATTAATTTCAAAGTGTGTACATCGATGGAAATTCTAAATCTAATGTGTGGATTTGCATGAATAAAAGCAGTAAGTAAAGAGTATTGCATCAGTTCAgtcatt

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0055001 muscle cell development biological_process
GO:0006413 translational initiation biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000149401

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002847 lncRNA upstream 159920 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA upstream 159920 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA upstream 159920 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00003082 lncRNA upstream 374712 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00000636 lncRNA upstream 374712 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00003083 lncRNA downstream 489290 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00002849 lncRNA downstream 490908 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00000651 lncRNA downstream 496465 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002850 lncRNA downstream 1996830 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 2176369 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00000633 mRNA upstream 389017 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA upstream 389017 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000635 mRNA upstream 389635 31113951 ~ 31129604 (+) True XLOC_000368
TCONS_00000629 mRNA upstream 454533 31019165 ~ 31064706 (+) False XLOC_000367
TCONS_00000631 mRNA upstream 455461 31054915 ~ 31063778 (+) False XLOC_000367
TCONS_00000638 mRNA downstream 52253 31573225 ~ 31598417 (+) True XLOC_000372
TCONS_00000639 mRNA downstream 117302 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000640 mRNA downstream 122251 31643223 ~ 31669901 (+) True XLOC_000373
TCONS_00000641 mRNA downstream 136870 31657842 ~ 31672343 (+) False XLOC_000374
TCONS_00000642 mRNA downstream 137039 31658011 ~ 31672027 (+) True XLOC_000374
TCONS_00000632 other upstream 455389 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 554235 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 1291734 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 1353174 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1658866 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000645 other downstream 185697 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 530641 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 993017 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1185137 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 1694269 33215241 ~ 33216718 (+) False XLOC_000390

Expression Profile

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