RNA id: TCONS_00000629


Basic Information

Item Value
RNA id TCONS_00000629
length 4254
RNA type mRNA
GC content 0.42
exon number 25
gene id XLOC_000367
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31019165 ~ 31064706 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCACAACCCCACCAGAAGCGGACTGAGTCTCATCTCTAAAGCCAGAACTCACACAAACTGAACCTGAACACAGACATGGAATCTTACAGGACTTTAACCGTACCGCTTCTCAGTTTGTTGGGATTGACGCTGATCTCCGCCTTTAATCTGGACACAGTGaacgtcatcaggaaaacggGAGATGCCAACAGCTTGTTTGGGTTCTCCATGGCCATGCACCGACAACTCAGACCAGCTGATAAAAGAATGTTGCTTGTTGGTTCCCCAAAGGCAAAAGCATTGCCCAATCAGAGGTCAAAAATTACAGGAGGCTTGTACAACTGTGACATAAACATTCCTGGTCAGTCATGCCAGCGAGTAATGTTTGACAATGAAGAAAACCTGCAGACTGAAAATAAAGAGAACCAGTGGATGGGAGTTACTGTACAGAGCCAGGGTCCTGGTGGAAAGATATTgGTCTGTGCACATCGATACCAGCGGCGCTTATTTGTTGGCTCAGTTCAGGAACTGCGTGACTTGACAGGTCGGTGCTATGTACTTAGTGAGGATGTGACGATTAATGAGATCTCAGATGAAGATGGAGGGGATTGGATGTTCTGCAATGGGAGAAACAGAGGGCACGAGCGGTTTGGATCATGCCAGCAGGGCATGTCCGCCACATTCACAAAGGACTATCACTATCTGGTGTTTGGAGCACCAGGCGCTTACAACTGGAAAGGAATTGTGCGGTTGGAGCAGAAGAACACCTCTCTGTTTGATAAGGATATCTTTGATGACGGCCCATATGAAGTTGGAGATGAAAACCGACTTGATGCAGAACTGGTCCCTGTTCCTGCTAACAGTTATTTAGGTTTCTCTTTGGATTCTGGAAAAATGCTGACTAAGAGAGGTCAGTTGACCATAGTTGCTGGGGCTCCAAGAGCCAATCACAGTGGGGCAGTTGTGCTTTTAAAGAAGGATGAGGCTAAATCCTCCTTGTTGACGGCTGAGTACACCCTAGAGGGTAGTGGACTTGCCTCTTCCTTTGGTTATGACCTTGCAGTGCTTGACATCAATGGAGATGGGTGGCAAGACATTGTAGTTGGAGCACCTCAGTACTTCATTAAAGATGGTGATATTGGTGGAGCAATCTATGTTTACCTTAACGAGGAAGGAGCTTGGGACAAGATTACTCCAAAGAGAATTGATGGACCTGCTTATTCCATGTTTGGTTTGGCTGTGGAAAACATGGGAGATGTGAATCTGGATGGATATCAAGATGTTGCTGTTAGCGCCCCATATGACAGCAATGGAGCTGGAAACGTGATTATCTTCCACGGTTCACCACAAGGACTGAAAAAATCCCAGGTTCTTGGAGGAAAAGATCACAATGTGAAACTCTTTGGATACTCTCTTGCTGGGAACATGGATCTGGACAGAAATAATTACCCTGATCTGGCCATTGGATCTCTTTCTGATTCAGTGTTTGTGTACAGGTCGCGTTCCGTTATCAATATTGAAAAGACTGTCACCACCACACCGAAAGAGCTAGACCTCACTAAGAAAAACTGCAACAATGGAAACAATATATGCCTTGATGTGAAAGCCTGCTTCAAATTTTCTGTCAAACCCAAAACCTACAATCCAACTCTGAAGGTGGCATACACCATCAGGGTTGAATCTGAAAGGAAAAAACTAAATCTTCCTTCTAGAGTCATTTTTAATCCACGCTCAAACAATGATTATGAAAGCACTGGGATTGTGGAGCTCAAGGGTCAAGGCACAGAAAGCTGCATCTACAGAAATCTCATGCTGCAGGAAACCCTAAAAGACAAACTGAGAGGCATTCCTATTGAAGTGTCTGTGGAGATCctgaatcaaaacaaacgcaGGAGAAGACAGGCTGCTCTCCCTAACCTTCTTCCCATCCTGGACTCGAACCAAGAAGCCACCACTGTGGCcatgGTTCAATTTATCAAGGAAGGATGCGGTGCTGACCATCTGTGCCAAAGTGACCTGCAGCTACAGTATAAATTCCACACCAGGGAACCAAACAAAGACAACTTCTTTCCCTTTGACGAAGAAAAAGGAGTTCCTATCCTGTCTCTTAGCGATCAGAAGGAAATTGCCCTGGAGATTAAAGCAGTCAACCTGGGCGAAGATGCTTATGAAACACAGTTGACTGCCTCATTCCCCAAATCCCTCTCTTATTCTGCTGTTCGCACTCAGTCTGGTGATAAACAGATCAGCTGTTTAGTCAATCAGAATGGCTCACAAGCAGATTGTGACCTTGGAAATCCATTCAAAAAGGATGCTGAGacaacattttacattattttgagcACGGGAGGAATTTCTTTGGATACCACTGAAATTGAAATCGACCTTAAACTCAAAACGACAAGTGAACAGAAGCAATTGCAAGCAGTCAAAGCCAAAGCCATTGTTAAGATCCAGCTGCTGTTGTCCCTCTCAGGGGTAGCCAAGCCATCTCAGGTCTTCTTTACTGGAGAGGTTAAAGGAGAGAGTGCCATGAAGATGGCAGGTGATGTCGGAAGTCCAATTGACTATGAATTCAGGGTTACAAACTTGGGCAAACCCCTGAAGTCTTTCGGCAGGGCGTCTATGATCATCCAATGGCCAAAGCATAACTCTCAAGGCAAATGGCTGCTGTATCTTATGAAGATGACATCAACCGGCTTAGACAGCTTGAGCTGCACCAACTCAGATGAGGTCAACAAACTCGGTTTAAAGGAGCTTTCAGTGTCAAGAACTAAACGTGAAGTTGGGGAAACTTCAGCAGCAGAGGGAAAAACCGCCTTTTTTACAGATAAAAGGAAATACACACTTTTGTCATGTGATGATGGTGCGGAGTGTATAACTTTCATATGTCCTCTCACGGGAATGGACAGCAATGCTGTTATTAGTCTGCGTGCTTACCTTTGGAATGCCACTTTCCTGGAGGATTATGCAAAATTGAACTACGTTGATATTATTGCCAAAGCATCACTTGATTTCAAGACCACAGCTACAAATATACAGCTGAAGAATGAGCCATCTCAGGTACGCGTTACTGTATTTCCAGAACGCAAAGTAGCACAGTACGGCGGTATGCCCTGGTGGGTTATACTGGTGGCCATTTTACTTGGACTCCTCTTGCTGGGCTTACTGGTCTTCCTGCTTTGGAAGTGTGGATTTTTCAAACGTTCTAAGTATGATGACAGCGTGCCCAGTTATAATGCTGTGCGGATAAAGAGAGAAGAGAGGGACAATCTGTCAGGCAAAGACGAAATGGATTCTTCAGAGAAGAAACAATGGATGACTTCTTGGAATGAAAATGAGAGCTACTCATAGCTAAATGCTAACCTATTTGAAAGCAAACCCAAGACTCCCTTGCTGAGGTTTTAATGCTTACTTTTGCACACACTCAactctttttttctgttattattccATCAAATTGCAAAAGGAAACATTAGAGCTTTTACTTCGATGTATTGAGTTTCAAAGAttgtattttaaaagtgtgtCTAAAAGACACGATGAACGAGGATTTAAAAAGATTACTTGAGTTTCAAGAGAATTTGCTTTCATGTTCCGCCCCATTTCAATTTGCTTCTCATTCATACATGTGTATATACATCTAATGTATTTATTCTCAGCAGatatttctgttgaacaaaggccaaagattttacatttttgttttgttttatgaaaGACTTTGTGTGCGTCAAGACTGCTTGGTTTATACTTTTTTGATATCTAGCAAGAAAAAAAACTGCCTGGATGTATGTAAATAATTTTGTcgtttgattttttaaaaaatatttgtgttgcCTAATTGTTTAAACCAATCAGGTACATTTCATTTCATAGGTTTTTCACTGTACTTAAACTACTTCAACTGGGACAGATTTTAATGAGGAACTACTTTGTAATTATCAGATATTTGGTTTAATATCATTTGACCACTATCCTTAATCAGTTCAGCTTTTaggtgtttcttttattttttgaaggTCATTTGAAAATGTCTTTGTATAAATGTGAAGTTccttttatttttgaaaacagcACCTTTTGGCAGTGCAAATGCTTTTATGACAAAACGTTCATTCTTTTGTTTGTAAAGTGACACTGAATTGGACAGCGGTGattacaaatgtttttacaatttaaaaaatgtattaactcACATGAAATACACTGAAGTAAAgaaatagattattaaagattattttcatttttgaaataaACATTTTGCTGGCCC

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-5 Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in myotome. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa and junctional epidermolysis bullosa with pyloric atresia. Orthologous to human ITGA6 (integrin subunit alpha 6).

Ensembl:

ensembl_id ENSDART00000102210

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002845 lncRNA upstream 159641 30855390 ~ 30859524 (+) True XLOC_000365
TCONS_00000626 lncRNA upstream 161240 30853969 ~ 30857925 (+) False XLOC_000365
TCONS_00000621 lncRNA upstream 291546 30723380 ~ 30727619 (+) False XLOC_000364
TCONS_00002844 lncRNA upstream 939636 30074710 ~ 30079529 (+) False XLOC_000358
TCONS_00003082 lncRNA downstream 76413 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00000636 lncRNA downstream 76611 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00002847 lncRNA downstream 289879 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA downstream 289879 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA downstream 291643 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00000627 mRNA upstream 45000 30946231 ~ 30974165 (+) False XLOC_000366
TCONS_00000625 mRNA upstream 283687 30723677 ~ 30735478 (+) True XLOC_000364
TCONS_00000623 mRNA upstream 284369 30723458 ~ 30734796 (+) False XLOC_000364
TCONS_00000624 mRNA upstream 284802 30723461 ~ 30734363 (+) False XLOC_000364
TCONS_00000622 mRNA upstream 291158 30723380 ~ 30728007 (+) False XLOC_000364
TCONS_00000633 mRNA downstream 46111 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA downstream 47730 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000635 mRNA downstream 49245 31113951 ~ 31129604 (+) True XLOC_000368
TCONS_00000638 mRNA downstream 508519 31573225 ~ 31598417 (+) True XLOC_000372
TCONS_00000639 mRNA downstream 573568 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000628 other upstream 54161 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 791660 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 853100 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1158792 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000579 other upstream 1938829 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000645 other downstream 641963 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 986907 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 1449283 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1641403 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 2150535 33215241 ~ 33216718 (+) False XLOC_000390

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU235106 True 4780 lncRNA 0.41 26 CI01000049 1487630 ~ 1511946 (-)