RNA id: TCONS_00000635


Basic Information

Item Value
RNA id TCONS_00000635
length 1427
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_000368
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31110817 ~ 31130222 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAATGAGAGCGCAGCGATGGGCAAGGAGAAGCTCCATATCAACATTGTGGTCATTGGCCATGTGGATTCAGGAAAGTCCACCACCACTGGCCACCTCATTTACAAGTGTGGAGGCATCGACAAGAGGACCATTGAAAAGTTTGAGAAGGAAGCTGCAGAGATGGGAAAAGGCTCCTTTAAGTATGCTTGGGTCCTTGACAAACTGAAAGCTGAGAGAGAGCGAGGCATCACCATCGATATCTCCCTGTGGAAGTTTGAGACAAGCAAATACTACGTCACCATCATTGATGCACCAGGACACAGAGACTTCATTAAGAACATGATCACTGGCACCTCACAGGCAGACTGTGCTGTGTTGATTGTAGCGGCTGGTGTTGGTGAATTTGAGGCTGGTATCTCAAAGAACGGGCAAACACGTGAACATGCCTTGCTGGCGTACACTCTCGGTGTTAAACAATTGATCGTGGGCGTTAACAAGATGGACTCTACGGAGCCCAATTATAGCCAGAAGCGCTATGAGGAGATTGTGAAGGAAGTCAGCACTTATATCAAGAAAATTGGCTACAACCCTGATACTGTGGCATTTGTTCCCATCTCTGGATGGAATGGGGATAACATGCTGGAGGCCAGCCCAAACATGACATGGTTCAAGGGCTGGAAGATCACCCGAAAGGATGGAAGTTCCTCTGGGACGACTCTGTTGGAGGCTCTAGATGCCATTCAGCCTCCAACCCGCCCCACTGACAAACCCCTCCGACTCCCATTGCAGGACGTCTACAAGATTGGAGgAATTGGTACAGTGCCTGTGGGGCGTGTTGAGACAGGAATTCTGAAACCTGGCCTGGTTGTGACATTTGCCCCTGTGAATGTAACCACTGAGGTGAAATCTGTTGAGATGCACCATGAGGCTCTTTCTGAAGCTCTTCCCGGCGACAATGTGGGATTTAATGTGAAGAATGTCTCAGTTAAAGATATTAGACGTGGAAATGTTGCTGGTGACAGCAAGAACGATCCTCCACAAGAGGCAGCGAGTTTCACTGCTCAGGTGATTATTCTGAACCATCCGGGTCAGATCAGTGCTGGTTATGCCCCTGTGCTGGACTGCCACACAGCTCACATTGCCTGTAAGTTTGCTGAGTTGAAGGAGAAGATTGACCGTCGCTCTGGGAAGAAGCTGGAAGACAATCCCAAGTCCCTGAAGTCTGGGGATGCTGCTATTGTAGACATGATACCAGGCAAACCCATGTGTGTGGAGAGTTTCTCTGAATATCCTCCTCTTGGTCGTTTTGCAGTGCGTGACATGCGCCAAACCGTCGCAGTGGGTGTCATCAAGGGGGTTGAGAAGAAGACCTCGACGTCTGGCAAAGTCACTAAATCTGCCCAAAAGGCCCAGAAGAACAAATGAATGTTGTGCTGGGCTGCAAAC

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-188 Predicted to enable GTP binding activity; GTPase activity; and translation elongation factor activity. Predicted to act upstream of or within translational elongation.

Ensembl:

ensembl_id ENSDART00000129362

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000630 lncRNA upstream 58769 31054415 ~ 31055182 (+) False XLOC_000367
TCONS_00002845 lncRNA upstream 254427 30855390 ~ 30859524 (+) True XLOC_000365
TCONS_00000626 lncRNA upstream 256026 30853969 ~ 30857925 (+) False XLOC_000365
TCONS_00000621 lncRNA upstream 386332 30723380 ~ 30727619 (+) False XLOC_000364
TCONS_00002843 lncRNA upstream 1034422 30074734 ~ 30079529 (+) True XLOC_000358
TCONS_00003082 lncRNA downstream 11515 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00000636 lncRNA downstream 11713 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00002847 lncRNA downstream 224981 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA downstream 224981 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA downstream 226745 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00000629 mRNA upstream 49245 31019165 ~ 31064706 (+) False XLOC_000367
TCONS_00000631 mRNA upstream 50173 31054915 ~ 31063778 (+) False XLOC_000367
TCONS_00000627 mRNA upstream 139786 30946231 ~ 30974165 (+) False XLOC_000366
TCONS_00000625 mRNA upstream 378473 30723677 ~ 30735478 (+) True XLOC_000364
TCONS_00000623 mRNA upstream 379155 30723458 ~ 30734796 (+) False XLOC_000364
TCONS_00000638 mRNA downstream 443621 31573225 ~ 31598417 (+) True XLOC_000372
TCONS_00000639 mRNA downstream 508670 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000640 mRNA downstream 513619 31643223 ~ 31669901 (+) True XLOC_000373
TCONS_00000641 mRNA downstream 528238 31657842 ~ 31672343 (+) False XLOC_000374
TCONS_00000642 mRNA downstream 528407 31658011 ~ 31672027 (+) True XLOC_000374
TCONS_00000632 other upstream 50101 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 148947 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 886446 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 947886 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1253578 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000645 other downstream 577065 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 922009 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 1384385 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1576505 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 2085637 33215241 ~ 33216718 (+) False XLOC_000390

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00001689 True 1966 mRNA 0.48 7 CM030143.1 12517012 ~ 12520705 (+)