RNA id: TCONS_00000628


Basic Information

Item Value
RNA id TCONS_00000628
length 610
RNA type nonsense_mediated_decay
GC content 0.48
exon number 5
gene id XLOC_000366
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30946231 ~ 30974165 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTGCCAATTTCACCGATCTTTCTTCTGGAGGAAGCCAAAAACTTCCCACAGTGTAGTCCGGCCTGCCATAGTGCGCCCAGCTTATCCCGTACCCAAGCACATTCAGAGGCCTGACTACGTGTCATCCAGCAAAGTGCCTGAATGGCCAGATTACATTGAGATTAAAGATGAAGAGCAGATCCAGGGATTAAGACGAGCGTGTCAACTAGCCAGACACATACTGCTGCTGACAGGAAACAGTTTGAAGGTTGGTATGACGACAGATGAAATAGACTTTATAGTCCATCAAGAAGCGATTCGTCACAATGGCTACCCTTCTCCCTTACATTATGGGGGCTTTCCGAAGTCGGTCTGTACctctgtgaacaatgttgtatgtCACGGCATTCCAGACAGGTTTATCTGGAAGGTTACCATGGTGACACCTCAGAGACATTTCTGATTGGCTCAGTCAACGACCAGGGCAGGAAATTAGTGGATGTGGCTCGTCAATGCAGAGATCAAGCCATCGCCGCCTGTGGCCCGGGACAACCTTTGTGCGTCATTGGCAACATCATCAGCAATATAGCAAACTCAAATGGATTTCGTGTATGTCCATATTTTATTGG

Function

GO:

id name namespace
GO:0070084 protein initiator methionine removal biological_process
GO:0006508 proteolysis biological_process
GO:0005739 mitochondrion cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0070006 metalloaminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-71 Predicted to enable metal ion binding activity and metalloaminopeptidase activity. Predicted to be involved in protein initiator methionine removal. Predicted to act upstream of or within proteolysis. Predicted to be located in mitochondrion. Orthologous to human METAP1D (methionyl aminopeptidase type 1D, mitochondrial).

Ensembl:

ensembl_id ENSDART00000149561

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002845 lncRNA upstream 96401 30855390 ~ 30859524 (+) True XLOC_000365
TCONS_00000626 lncRNA upstream 98000 30853969 ~ 30857925 (+) False XLOC_000365
TCONS_00000621 lncRNA upstream 228306 30723380 ~ 30727619 (+) False XLOC_000364
TCONS_00003081 lncRNA upstream 876396 30074635 ~ 30079529 (+) False XLOC_000358
TCONS_00002844 lncRNA upstream 876396 30074710 ~ 30079529 (+) False XLOC_000358
TCONS_00000630 lncRNA downstream 89411 31054415 ~ 31055182 (+) False XLOC_000367
TCONS_00003082 lncRNA downstream 176115 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00000636 lncRNA downstream 176313 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00002847 lncRNA downstream 389581 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA downstream 389581 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00000625 mRNA upstream 220447 30723677 ~ 30735478 (+) True XLOC_000364
TCONS_00000623 mRNA upstream 221129 30723458 ~ 30734796 (+) False XLOC_000364
TCONS_00000624 mRNA upstream 221562 30723461 ~ 30734363 (+) False XLOC_000364
TCONS_00000622 mRNA upstream 227918 30723380 ~ 30728007 (+) False XLOC_000364
TCONS_00000620 mRNA upstream 400952 30551777 ~ 30554973 (+) True XLOC_000363
TCONS_00000629 mRNA downstream 54161 31019165 ~ 31064706 (+) False XLOC_000367
TCONS_00000631 mRNA downstream 89911 31054915 ~ 31063778 (+) False XLOC_000367
TCONS_00000633 mRNA downstream 145813 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA downstream 147432 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000635 mRNA downstream 148947 31113951 ~ 31129604 (+) True XLOC_000368
TCONS_00000618 other upstream 728420 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 789860 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1095552 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000579 other upstream 1875589 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000565 other upstream 2953988 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000632 other downstream 92236 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000645 other downstream 741665 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 1086609 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 1548985 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1741105 32706109 ~ 32706227 (+) True XLOC_000388

Expression Profile

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