RNA id: TCONS_00000620


Basic Information

Item Value
RNA id TCONS_00000620
length 1751
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_000363
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30551777 ~ 30554973 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAGCTCTATAAatgctttccggatgcactgtattttaCAAGGATTTTTGGGTTTTGggacaaaatatagaaatgacaATTTGATATGAATTAGTAAGGTTTACTTCTACCTTAAACATTGTTTCTTCTTATCCTGTCTGTTGACAAATCGAGCTCTCTGTGTTTTGCAGTTTTGAGCAGATGAGCCAAGACCATGTCAAATTTTAGTAAAATGAAGCAACAATGGTTAGCAGATTTCACAATAGTTTTCTTCAACGTGCAAAAACTTAAAATTGGTAAACTATCTTTTAAGTTAAGACTAGAAAATCTTATTTTTGCATTACAACTCGTAGATTCCTTGTATGAattctttggtaaaaaaaaaaattaaaataaataaaaagtctagATGTCTCAGTGAAAGCCACAAGATAATTTCAGTTCTCCATAAAGAGTTAAACATCCTCCCCACAACACTGAAAGAAGCAAAAGGAAAGTGACGAAAAGAGCAGCAGAAATGGAAAAAGAGGCAGGAAGAGACCACTTTCTCACGTTACACAGTCACATTTTAAAAGTGAGATGAGACTTAAAAAATAGCGAGAAAGAATAGCATTGATGTCTAACTGAAAATCTGCTTTATGCCATCTGTGAGGTCTCCTGTTTATAACTATGATGAGTCCTGATTTAGACCTGAACTTCTCTTCCAACTGCAACTTGTATGATCATCGTCCAGTGGCCCGGGTTCTCATACCACTGGTCTACTCCATCATATGTCCAGTGGGACTCTTAGGAAATGCTCTGGCTCTCCATGTGGTGATCTCCAGCACCACCAAAATTAATTCAATCACGCTTTATTCCGCCAACCTGGCTGTGTCTGATATCCTATTCTGCCTGTCGCTTCCTCTACGAGCTGTTTACTATGGATTGGGTTTCCACTGGCCGATGGGAGAAGTACTGTGTAAAGCCATAGCACTGCTCTTCTATTTGAACTGCTACGCTGGTGTGAACTTCATGACATGTCTGGCGGTGGACCGTTTTGTGGCGCTAGTGTTTCCTGCTAGACTGGCAAAACTGAGAAAGGCAAAAAATGTACGCTTTGTGTGTCTGGCAATATGGCTGCTGGTGCTGGCCCAGACGCTGCCCCTGCTAACAATCGGCCTTACTAAAACCGAGCCTGACAGCAGCATCACCTGTATGGAATACCCCAATTTTGAGGGTGTTTTCAAAGGGCTGCCCTACATGCTGATCGTAGCAGTAGTTTTAGGTTTTGGCATCCCAGTGATGACAATCATCGCTTGTTATTCAATCCTGACTCACAAACTACATCAAGCGGCAAAGTCAAACCAACTGACAGAACGTTCCGGAAAGACCAAAAAAGCCAGAGGAGTGATTGCAGGCGTGGTATTTGTGTTTGTGGTTTGTTTCAGCCCATATCACATAGACATCCTGCAATACATGATTCGGAAGCTTCTCTATGAAACGGACTGCAAGGAACTGCAGTCGTTTCAGATCTCTCTACATATCACGGTGTGCCTTATGAACCTAAATTCCTGCTTGGATCCCTTCGTTTACTTCTTTGCATGTAAAGGCTATAAGCAAAAGGTAATGAGGATGATGAAGTGGCAGGTTGGCACCCACTTCTCCAGTGTGAAGAACTCTGCTGAAAGTTCAGGCACAGGTGATGTGCTCGGAACACGCCGCAACAATAGGATAATAATGAACAATGTTGGAGAGGATCAGCAGATTTGTTATCAACCAAGCGCAACATAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-74 Predicted to be located in plasma membrane. Orthologous to human GPR183 (G protein-coupled receptor 183).

Ensembl:

ensembl_id ENSDART00000112778

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003081 lncRNA upstream 472248 30074635 ~ 30079529 (+) False XLOC_000358
TCONS_00002844 lncRNA upstream 472248 30074710 ~ 30079529 (+) False XLOC_000358
TCONS_00002843 lncRNA upstream 472248 30074734 ~ 30079529 (+) True XLOC_000358
TCONS_00000607 lncRNA upstream 742281 29806494 ~ 29809496 (+) True XLOC_000355
TCONS_00000598 lncRNA upstream 1043304 29507647 ~ 29508473 (+) True XLOC_000350
TCONS_00000621 lncRNA downstream 168407 30723380 ~ 30727619 (+) False XLOC_000364
TCONS_00000626 lncRNA downstream 298996 30853969 ~ 30857925 (+) False XLOC_000365
TCONS_00002845 lncRNA downstream 300417 30855390 ~ 30859524 (+) True XLOC_000365
TCONS_00000630 lncRNA downstream 499442 31054415 ~ 31055182 (+) False XLOC_000367
TCONS_00003082 lncRNA downstream 586146 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00000619 mRNA upstream 113741 30422143 ~ 30438036 (+) True XLOC_000362
TCONS_00000614 mRNA upstream 241088 30083578 ~ 30310689 (+) False XLOC_000359
TCONS_00000613 mRNA upstream 241088 30083578 ~ 30310689 (+) False XLOC_000359
TCONS_00000615 mRNA upstream 241088 30100257 ~ 30310689 (+) False XLOC_000359
TCONS_00000616 mRNA upstream 394779 30103297 ~ 30156998 (+) True XLOC_000359
TCONS_00000622 mRNA downstream 168407 30723380 ~ 30728007 (+) False XLOC_000364
TCONS_00000623 mRNA downstream 168485 30723458 ~ 30734796 (+) False XLOC_000364
TCONS_00000624 mRNA downstream 168488 30723461 ~ 30734363 (+) False XLOC_000364
TCONS_00000625 mRNA downstream 168704 30723677 ~ 30735478 (+) True XLOC_000364
TCONS_00000627 mRNA downstream 391258 30946231 ~ 30974165 (+) False XLOC_000366
TCONS_00000618 other upstream 324272 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 385712 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 691404 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000579 other upstream 1471441 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000567 other upstream 2556166 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000628 other downstream 400952 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 502267 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000645 other downstream 1151696 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 1496640 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 1959016 32513989 ~ 32514104 (+) True XLOC_000386

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_01312448_01313521.mRNA True 3096 mRNA 0.40 1 CI01000049 1311994 ~ 1315089 (+)