RNA id: TCONS_00000630


Basic Information

Item Value
RNA id TCONS_00000630
length 551
lncRNA type retained_intron
GC content 0.38
exon number 2
gene id XLOC_000367
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31019165 ~ 31064706 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttacattattttgagcACGGGAGGAATTTCTTTGGATACCACTGAAATTGAAATCGACCTTAAACTCAAAACGACAAGTGAACAGAAGCAATTGCAAGCAGTCAAAGCCAAAGCCATTGTTAAGATCCAGCTGCTGTTGTCCCTCTCAGGGTAGGTTTGCTAACCGCTATCATTTTTTTGGTTTGTATTATCAATGTTCTATCTTTGTAACTTCAACTTTCATCATGTATTATCTGCAGGGTAGCCAAGCCATCTCAGGTCTTCTTTACTGGAGAGGTTAAAGGAGAGAGTGCCATGAAGATGGCAGGTGATGTCGGAAGTCCAATTGACTATGAATTCAGGGTGaatattacactgcaaaaaatgccctTTTTTGAACATAGATCTTACATTTAGTTAAAGcattataagaaaataaatgacgaGCCCGAGTCAGAATGAACCCAGAACATTCTTAAACTCAAtctttttatatagttttagtttACTGCATTTAGATGTAAAGGAAGTGGCTCCTTGGTGTGTTCTGGACGTTAATGCATTTCAAC

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-5 Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in myotome. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa and junctional epidermolysis bullosa with pyloric atresia. Orthologous to human ITGA6 (integrin subunit alpha 6).

Ensembl:

ensembl_id ENSDART00000150169

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002845 lncRNA upstream 194891 30855390 ~ 30859524 (+) True XLOC_000365
TCONS_00000626 lncRNA upstream 196490 30853969 ~ 30857925 (+) False XLOC_000365
TCONS_00000621 lncRNA upstream 326796 30723380 ~ 30727619 (+) False XLOC_000364
TCONS_00003081 lncRNA upstream 974886 30074635 ~ 30079529 (+) False XLOC_000358
TCONS_00002844 lncRNA upstream 974886 30074710 ~ 30079529 (+) False XLOC_000358
TCONS_00003082 lncRNA downstream 85937 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00000636 lncRNA downstream 86135 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00002847 lncRNA downstream 299403 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA downstream 299403 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA downstream 301167 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00000627 mRNA upstream 80250 30946231 ~ 30974165 (+) False XLOC_000366
TCONS_00000625 mRNA upstream 318937 30723677 ~ 30735478 (+) True XLOC_000364
TCONS_00000623 mRNA upstream 319619 30723458 ~ 30734796 (+) False XLOC_000364
TCONS_00000624 mRNA upstream 320052 30723461 ~ 30734363 (+) False XLOC_000364
TCONS_00000622 mRNA upstream 326408 30723380 ~ 30728007 (+) False XLOC_000364
TCONS_00000633 mRNA downstream 55635 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA downstream 57254 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000635 mRNA downstream 58769 31113951 ~ 31129604 (+) True XLOC_000368
TCONS_00000638 mRNA downstream 518043 31573225 ~ 31598417 (+) True XLOC_000372
TCONS_00000639 mRNA downstream 583092 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000628 other upstream 89411 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 826910 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 888350 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1194042 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000579 other upstream 1974079 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000632 other downstream 2058 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000645 other downstream 651487 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 996431 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 1458807 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1650927 32706109 ~ 32706227 (+) True XLOC_000388

Expression Profile

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