Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000608 |
| length | 693 |
| RNA type | processed_transcript |
| GC content | 0.47 |
| exon number | 4 |
| gene id | XLOC_000356 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 29831759 ~ 29860895 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0014032 | neural crest cell development | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0048385 | regulation of retinoic acid receptor signaling pathway | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030219-92 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development and regulation of retinoic acid receptor signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; immature eye; nervous system; neural keel; and neural plate. Human ortholog(s) of this gene implicated in holoprosencephaly and holoprosencephaly 5. Orthologous to human ZIC2 (Zic family member 2). |
| ensembl_id | ENSDART00000142184 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000607 | lncRNA | upstream | 22263 | 29806494 ~ 29809496 (+) | True | XLOC_000355 |
| TCONS_00000598 | lncRNA | upstream | 323286 | 29507647 ~ 29508473 (+) | True | XLOC_000350 |
| TCONS_00002842 | lncRNA | upstream | 330725 | 29500308 ~ 29501034 (+) | True | XLOC_000349 |
| TCONS_00000597 | lncRNA | upstream | 379026 | 29451465 ~ 29452733 (+) | True | XLOC_000348 |
| TCONS_00000596 | lncRNA | upstream | 386040 | 29444452 ~ 29445719 (+) | True | XLOC_000347 |
| TCONS_00003081 | lncRNA | downstream | 214262 | 30074635 ~ 30079529 (+) | False | XLOC_000358 |
| TCONS_00002844 | lncRNA | downstream | 214337 | 30074710 ~ 30079529 (+) | False | XLOC_000358 |
| TCONS_00002843 | lncRNA | downstream | 214361 | 30074734 ~ 30079529 (+) | True | XLOC_000358 |
| TCONS_00000621 | lncRNA | downstream | 863007 | 30723380 ~ 30727619 (+) | False | XLOC_000364 |
| TCONS_00000626 | lncRNA | downstream | 993596 | 30853969 ~ 30857925 (+) | False | XLOC_000365 |
| TCONS_00000606 | mRNA | upstream | 7384 | 29798140 ~ 29824375 (+) | False | XLOC_000355 |
| TCONS_00000605 | mRNA | upstream | 33852 | 29766725 ~ 29797907 (+) | True | XLOC_000354 |
| TCONS_00000604 | mRNA | upstream | 67699 | 29759678 ~ 29764060 (+) | True | XLOC_000353 |
| TCONS_00000603 | mRNA | upstream | 67703 | 29759678 ~ 29764056 (+) | False | XLOC_000353 |
| TCONS_00000600 | mRNA | upstream | 88119 | 29664336 ~ 29743640 (+) | False | XLOC_000352 |
| TCONS_00000610 | mRNA | downstream | 1701 | 29862074 ~ 29953746 (+) | False | XLOC_000357 |
| TCONS_00000611 | mRNA | downstream | 1709 | 29862082 ~ 29876024 (+) | False | XLOC_000357 |
| TCONS_00000612 | mRNA | downstream | 1760 | 29862133 ~ 29876644 (+) | True | XLOC_000357 |
| TCONS_00000614 | mRNA | downstream | 223205 | 30083578 ~ 30310689 (+) | False | XLOC_000359 |
| TCONS_00000613 | mRNA | downstream | 223205 | 30083578 ~ 30310689 (+) | False | XLOC_000359 |
| TCONS_00000579 | other | upstream | 751423 | 29068662 ~ 29080336 (+) | False | XLOC_000337 |
| TCONS_00000565 | other | upstream | 1829822 | 27977370 ~ 28001937 (+) | False | XLOC_000332 |
| TCONS_00000567 | other | upstream | 1836148 | 27984393 ~ 27995611 (+) | True | XLOC_000332 |
| TCONS_00000557 | other | upstream | 2100779 | 27713349 ~ 27730980 (+) | False | XLOC_000329 |
| TCONS_00000518 | other | upstream | 3712135 | 26111385 ~ 26119624 (+) | True | XLOC_000317 |
| TCONS_00000617 | other | downstream | 305580 | 30165953 ~ 30166065 (+) | True | XLOC_000360 |
| TCONS_00000618 | other | downstream | 367018 | 30227391 ~ 30227505 (+) | True | XLOC_000361 |
| TCONS_00000628 | other | downstream | 1095552 | 30955925 ~ 30965004 (+) | True | XLOC_000366 |
| TCONS_00000632 | other | downstream | 1196867 | 31057240 ~ 31063850 (+) | True | XLOC_000367 |
| TCONS_00000645 | other | downstream | 1846296 | 31706669 ~ 31722875 (+) | True | XLOC_000376 |
