RNA id: TCONS_00000604


Basic Information

Item Value
RNA id TCONS_00000604
length 1414
RNA type mRNA
GC content 0.40
exon number 10
gene id XLOC_000353
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29759678 ~ 29764060 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGaagacagaacaaaaaaaatgagGGCCCTAATACAGCTGGCTTACTTCATCTGTTTTAGCATCTTTCTTGAGACGTGTCTCTGCAAAGTGAAACATGACCAGGTTTTGGCTATCACTGTATCCTCACAGGAACATGTGGAAAAAGTGCAGAACCTTACAAGTCACAACGAGACTGCTTTGTGGCAACCTGCTTCACCCAATTACATTACAACAAACTCTGAAGTTCACCTTTACATTCAGTCAACAAGTGTGCAGTTTGTCAAAGAACACCTTCGTGAACATGCCATTACATTTAGAGTTCTTGTGGAAAACACAGCAGCACTTGTTGCGATGCAGATCAGAAATGATACATCAGATCCCCGAAGCGGAGGCGTCTTCTATGAGAGATATCATTCCTTAgaagatATCTACTACTGGATAAATAAGACCAGCCGAGAACATTCAGACATGGTGAAGGTCATTCTTATTGGATCATCTTCTGAGAAACGGCCACTCTATGTTCTGAAGCTGTCAGGCAAGAGGGAAGAAGAGGTGAACAGAGCCATGTGGATGGACTGTGGTATTCATGCACGAGTTGATTTGAACAGAAATTTTGATGCAAACTGGTGCACTAAAGGAGCCTCCGATGATCCATGTGATCCCACTTATTGCGGTCAGTTTCCAGAGTCTGAACCAGAGACCCAAGCTGTGGCAAAGTTCCTGCGCTCCCATAAGGACACAGTCAAGCTGTACCTCTCCATTCACTCCTATTCTCAGATGCTCTTGTTTCCTTACTCCTGTTCCTATAATGAGATTCCAAACCACAATGAACTGtttGAACTTGTTAAAGAGGCCTCAACAAAAATACGCAGATACTACAGGAATAACTATAAATATGGATCCGGTGCAAAAACCATTTATTTAGCTCCAGGAGGCTCTGATGATTGGGCATATGATCTAGGAATAAAATATTCCTTCACTTTTGAGCTTCAAGACCGTGGTCAATATGGTTTTCTTCTCCCGCCCAGCTTTATCCCACAGGCTTGTAATGAGGCTCTTCTGGCTGCAAAGGTCATAGCTTTACATGTGATCAACAAAACCCAATGATTTTTTCCGCTACAGACAACCTGAGCAAACTATGAAATGTGCTACAGATTCAAATAATGAACTTTTccatttagttaaaaataaatgtgcaggctactttaaatgttcttattACAGTTCAgctatagcactttattttacagtccaGTTCCACATCTACATACTGCATCTAATTAAAGTGAATAGGTAATAAATAATCCCAAGCCTTAAACTTGAGCCTAGGAGCATTAAAGTGCATGTAGgtctactgtaaaataaagtgcaaacaGAAAGCCCTTGataagaaataaatacataatacttattaataaagaaacaaacctT

Function

GO:

id name namespace
GO:0042730 fibrinolysis biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko01002 Peptidases and inhibitors
ko02042 Bacterial toxins

ZFIN:

id description
ZDB-GENE-050522-259 Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in fibrinolysis and proteolysis. Predicted to be active in extracellular space. Is expressed in liver. Human ortholog(s) of this gene implicated in chronic kidney disease. Orthologous to human CPB2 (carboxypeptidase B2).

Ensembl:

ensembl_id ENSDART00000101856

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000598 lncRNA upstream 251205 29507647 ~ 29508473 (+) True XLOC_000350
TCONS_00002842 lncRNA upstream 258644 29500308 ~ 29501034 (+) True XLOC_000349
TCONS_00000597 lncRNA upstream 306945 29451465 ~ 29452733 (+) True XLOC_000348
TCONS_00000596 lncRNA upstream 313959 29444452 ~ 29445719 (+) True XLOC_000347
TCONS_00000595 lncRNA upstream 447119 29311527 ~ 29312559 (+) True XLOC_000346
TCONS_00000607 lncRNA downstream 42434 29806494 ~ 29809496 (+) True XLOC_000355
TCONS_00003081 lncRNA downstream 310575 30074635 ~ 30079529 (+) False XLOC_000358
TCONS_00002844 lncRNA downstream 310650 30074710 ~ 30079529 (+) False XLOC_000358
TCONS_00002843 lncRNA downstream 310674 30074734 ~ 30079529 (+) True XLOC_000358
TCONS_00000621 lncRNA downstream 959320 30723380 ~ 30727619 (+) False XLOC_000364
TCONS_00000600 mRNA upstream 16038 29664336 ~ 29743640 (+) False XLOC_000352
TCONS_00000601 mRNA upstream 16043 29738422 ~ 29743635 (+) False XLOC_000352
TCONS_00000602 mRNA upstream 16209 29741843 ~ 29743469 (+) True XLOC_000352
TCONS_00000599 mRNA upstream 240676 29515160 ~ 29519002 (+) True XLOC_000351
TCONS_00000594 mRNA upstream 368644 29281764 ~ 29391034 (+) True XLOC_000345
TCONS_00000605 mRNA downstream 2665 29766725 ~ 29797907 (+) True XLOC_000354
TCONS_00000606 mRNA downstream 34080 29798140 ~ 29824375 (+) False XLOC_000355
TCONS_00000609 mRNA downstream 93972 29858032 ~ 29860895 (+) True XLOC_000356
TCONS_00000610 mRNA downstream 98014 29862074 ~ 29953746 (+) False XLOC_000357
TCONS_00000611 mRNA downstream 98022 29862082 ~ 29876024 (+) False XLOC_000357
TCONS_00000579 other upstream 679342 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000565 other upstream 1757741 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other upstream 1764067 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000557 other upstream 2028698 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 3640054 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000608 other downstream 67699 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 401893 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 463331 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 1191865 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 1293180 31057240 ~ 31063850 (+) True XLOC_000367

Expression Profile

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