RNA id: TCONS_00002842


Basic Information

Item Value
RNA id TCONS_00002842
length 604
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_000349
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29500308 ~ 29501034 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGCAAATCCATTTGTAGTTTTGACTCCACCCCCACCTTCCTACTGGACATTTAAAGGATTGTACTGTCTCCAGGTTACTTGCAGTTTCTCTCAGTGTGCGATCAAAAGTAACTGTCATGGTCACACAATGGAGACAAGGATTGTTATCTCTTCAGTTTATTCAAAACACAATGGATTGTTCAACAGGAGAAGTTGGGAGACACATCCATAAGAGAAGTGGAACATCCATGGAAGAAGCCGAGCTAGGAAGAAGGTTAGGTGAACCATCTGACATTGTATGACTGGAAACGAGAAGTGTTTATAGGGGATGGTAATTGCTTTTGTAGGTGTGTCTCATTAGAACTCAGGTGATAGTGCTTGGGTGTGATGAGAGACAGAAGAAGGTGAGAGATGATTGGAGCTTTGGGAACGAGATAGGGATGTGAAAGTAACACACATGCAgaatatttctatttatatataatatacacactctttgttgtagttttaaaaaaaaaaagatattgcaAAGAACAATTGTcagaaatattaattaatatgccTATTATTAGATACTAGTCTTTTCAAAGCAATTTAAACTACCTCTTCAATATGtacaataag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000597 lncRNA upstream 47575 29451465 ~ 29452733 (+) True XLOC_000348
TCONS_00000596 lncRNA upstream 54589 29444452 ~ 29445719 (+) True XLOC_000347
TCONS_00000595 lncRNA upstream 187749 29311527 ~ 29312559 (+) True XLOC_000346
TCONS_00000591 lncRNA upstream 315039 29183972 ~ 29185269 (+) True XLOC_000342
TCONS_00000588 lncRNA upstream 320374 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000598 lncRNA downstream 6613 29507647 ~ 29508473 (+) True XLOC_000350
TCONS_00000607 lncRNA downstream 305460 29806494 ~ 29809496 (+) True XLOC_000355
TCONS_00003081 lncRNA downstream 573601 30074635 ~ 30079529 (+) False XLOC_000358
TCONS_00002844 lncRNA downstream 573676 30074710 ~ 30079529 (+) False XLOC_000358
TCONS_00002843 lncRNA downstream 573700 30074734 ~ 30079529 (+) True XLOC_000358
TCONS_00000594 mRNA upstream 109274 29281764 ~ 29391034 (+) True XLOC_000345
TCONS_00000593 mRNA upstream 228835 29267841 ~ 29271473 (+) True XLOC_000344
TCONS_00000592 mRNA upstream 271915 29211540 ~ 29228393 (+) True XLOC_000343
TCONS_00000590 mRNA upstream 297619 29183962 ~ 29202689 (+) False XLOC_000342
TCONS_00000589 mRNA upstream 320775 29178331 ~ 29179533 (+) True XLOC_000341
TCONS_00000599 mRNA downstream 14126 29515160 ~ 29519002 (+) True XLOC_000351
TCONS_00000600 mRNA downstream 163302 29664336 ~ 29743640 (+) False XLOC_000352
TCONS_00000601 mRNA downstream 237388 29738422 ~ 29743635 (+) False XLOC_000352
TCONS_00000602 mRNA downstream 240809 29741843 ~ 29743469 (+) True XLOC_000352
TCONS_00000603 mRNA downstream 258644 29759678 ~ 29764056 (+) False XLOC_000353
TCONS_00000579 other upstream 419972 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000565 other upstream 1498371 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other upstream 1504697 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000557 other upstream 1769328 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 3380684 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000608 other downstream 330725 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 664919 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 726357 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 1454891 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 1556206 31057240 ~ 31063850 (+) True XLOC_000367

Expression Profile

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