RNA id: TCONS_00000590


Basic Information

Item Value
RNA id TCONS_00000590
length 2236
RNA type mRNA
GC content 0.40
exon number 15
gene id XLOC_000342
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29183962 ~ 29202689 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAAGATGACCATGAGTTGAGTTTAGAGCGATTTAATTTTATCAGTAATGCACCGACCGAGATGCTTACATATTTTTGCAATGACAGGTCGATGAGGTTATAGCCTATGAACCAACTGCAAAATCTAAACATCTAAAATGCGTTTAAATGTCTTGTTATATTGCGGTTTAAGGTCATCTCAGTAACGCAATCTTTTAAACTCTATTCAAATACTTTGCGTTTTACGAATGTAACTTAGGATGACAATGAGGCTGGCTTCAGCACTGATACTTAATTCTGGCTTTAGAATCAGGCGTGAAATTCATAGTGGAGTTACAAAAACGTCATTACTGTGCCGTCGTACTGCATGCAGCAGGACGGAAAGAGGGTGGGTAAAACCAGTGGGTTTTGACACCGGTGTAACGGCTTACAATAGTCTTACCAAGAAGAAAGAACCTTTAATTCTGTCACAAGAAAAAATTGCTACCTGGTATAGCTGTGGACCGACTGTTTATGATCATGCCCATCTGGGTCATGCGTGTTCATATGTCAGATTTGATATTCTCCAAAGGATATTATCAAGACTTTTTGGAATTAATGTCATTCATGTTATGGTCATCACTGACATTGATGATAAAATCATACAAAGAAGCCTTGAGGAGAACATCTCACCCATCACTCTTGCAAGAATGCACGAGGAAGAATTTAAAAAGGATATGCTAGCACTGCGGGTTCTTCCTCCCGTAGTATATATGAGGGTGACAGAAAATATACCTCAAATTATAGCTTTTATAGAGCGTATTATTGGAAATGGACATGCCTATGTCACAAGTCAAGGGAATGTCTACTTTAACACGAAGTCTATTAGTCATCGTTATGGCAAGCTTGTCAATCTTGGAGGAAATGCTGGGGAACAGGgGGTTCAGGACAAAGAGAATTCAAGAGACTTTGCTTTGTGGAAAGCATCCAAACCATTTGAACCTTACTGGGAGTCACCTTGGGGACAAGGAAGACCTGGGTGGCACATTGAATGTTCCACAATTGCTAGCTCAGTGTTTGGACATCAGCTGGATATACACTCTGGAGGGATTGACCTTGCCTTCCCACACCATGAGAATGAAATTGCCCAGTCAGAGGCATATCATCAGTGTGAACAGTGGGGAAACTACTTTCTACACTCTGGGCACCTTCATTTAAAAGGAAGTGTAGAGAAGATGTCAAAATCCTTGAAGAATTATGTAACTATAAAGgatTTTCTGGCATCTTATACTGCTAATGAGTTTCGACTTTTCTGTCTTCTGACCAAATACAGATCAGCAATCGACTATAGTGATGCTAGCATGAATGAAGCCCAATCTACACTGTCCACCATCTCTGCCTTCTTCCACAATGCACAGGCCTACATGCAGGGCCACATGCAGTGCCAGCCTGTAGAGGAAGGATTTCTCTGGGAGAGGTTGTCTAATACTCAGACCAGTGTTCATAAAATGCTTGCCGATGACTTTGACACACCAAAAGCTGTGGATGCCATCATGAGTCTCATTTACCATGGCAACTGTCAGCTTCAGCCTGCTACTAAGGTGGATGGGCCTAGGAGTCCTGCTGTATTTGGAGCCATAATGTCCTATGTTATGGAAATAATGAGTGTTTTTGGAGTGGATCTATCAGACAAAACGGAAGTCCAAGTTTCCTCTGGAGTTTTGAATAATGTTGTGGAGGAGTTGGTTCATTTTCGGAGTGAAGTTCGTAAATTTGCTCTTTCTGTGGAAGACCAAGCACCACAGGAATCCCAGACTGGCAATAAAAATCAGAAAAGGCATCATCAACCAGACAGATTACACTTAAGCTTACTGAAAGCGTGTGATGCCTTAAGGAATAATCTAGCACCCCTTGGAGTCCACATTAAGgaTAGAGGCACCAACTCCACGTGGGAGGTAACAAAGGCAGAGACGAGGAAGTAGTCCCTAACTGAATTTTAACAAACTGTATTGATTAGGACTCAGTTTAAGcgctttaatttttttcttactaATGCAACTAAATCTGGAAAGCAcatttatgtattattgtcattttcaataaatctgttaaatgtttatcataaacttttgaTACAACTTCTGTAGCAGTAAAGTGTATTAGGACAGGGTCATGAAGTTACTAAAGCAAAGCATTTTAATAGGTGCCATTAGCATATAAAACTTAAGCAAAATTACACATTGTTTTTCAGTTAGCTGATTTTTACTCAAATGTTTC

Function

GO:

id name namespace
GO:0021828 gonadotrophin-releasing hormone neuronal migration to the hypothalamus biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006423 cysteinyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0004817 cysteine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5564 Predicted to enable ATP binding activity and cysteine-tRNA ligase activity. Acts upstream of or within gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 27. Orthologous to human CARS2 (cysteinyl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDART00000113735

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000585 lncRNA upstream 3314 29174195 ~ 29180648 (+) True XLOC_000340
TCONS_00000588 lncRNA upstream 4028 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000587 lncRNA upstream 4028 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000577 lncRNA upstream 112606 29068649 ~ 29071356 (+) False XLOC_000337
TCONS_00000576 lncRNA upstream 279327 28903770 ~ 28904635 (+) True XLOC_000336
TCONS_00000595 lncRNA downstream 108838 29311527 ~ 29312559 (+) True XLOC_000346
TCONS_00000596 lncRNA downstream 241763 29444452 ~ 29445719 (+) True XLOC_000347
TCONS_00000597 lncRNA downstream 248776 29451465 ~ 29452733 (+) True XLOC_000348
TCONS_00002842 lncRNA downstream 297619 29500308 ~ 29501034 (+) True XLOC_000349
TCONS_00000598 lncRNA downstream 304958 29507647 ~ 29508473 (+) True XLOC_000350
TCONS_00000586 mRNA upstream 4032 29178117 ~ 29179930 (+) False XLOC_000341
TCONS_00000589 mRNA upstream 4429 29178331 ~ 29179533 (+) True XLOC_000341
TCONS_00000582 mRNA upstream 19051 29140884 ~ 29164911 (+) False XLOC_000339
TCONS_00000584 mRNA upstream 19612 29162478 ~ 29164350 (+) True XLOC_000339
TCONS_00000583 mRNA upstream 41464 29140981 ~ 29142498 (+) False XLOC_000339
TCONS_00000592 mRNA downstream 8851 29211540 ~ 29228393 (+) True XLOC_000343
TCONS_00000593 mRNA downstream 65152 29267841 ~ 29271473 (+) True XLOC_000344
TCONS_00000594 mRNA downstream 79075 29281764 ~ 29391034 (+) True XLOC_000345
TCONS_00000599 mRNA downstream 312471 29515160 ~ 29519002 (+) True XLOC_000351
TCONS_00000600 mRNA downstream 461647 29664336 ~ 29743640 (+) False XLOC_000352
TCONS_00000579 other upstream 103626 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000565 other upstream 1182025 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other upstream 1188351 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000557 other upstream 1452982 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 3064338 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000608 other downstream 629070 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 963264 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 1024702 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 1753236 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 1854551 31057240 ~ 31063850 (+) True XLOC_000367

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_00379082_00388164.mRNA True 1930 mRNA 0.43 13 CI01000049 378973 ~ 388410 (+)