RNA id: TCONS_00000592


Basic Information

Item Value
RNA id TCONS_00000592
length 4190
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_000343
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29211540 ~ 29228393 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTCACTCGGCCACTCCGAACGAGGAGTTGCTAGTGGAGAACTACAGACATTACGCGCTGAAATCTCCAGAAATCGGTtaagtttttcttgtttttttttttttaacgaatggATAAGTTTTGGAAACTGAGTAAATAAACTGTCAACGCAAGTATGGCAAGTCCGCCTCTTAAAGGGGGACCCTCGCTATCAAACAGCAACAACATTCATTCAAACAACATACGAAAACATGGATATCTCAAGAAGCAAAAACACGGACATCGGCGCTATTTTGTTTTGAAAGACACGAGCGACGGACTCCCAGCGCGCTTGGAATACCACGAGAATGAAAAGAAATGGAAAAACAAGTCTGCTCCAAAAAGAGTGATATTCCTCGACTCGTGTTTGAGCATAAACAAGCGCGCTGACGCGAAACACAGATATTTGATAGCCCTCTATACCAAGGACGAATATTTTGCTGTGGCTGCGGAGAATGAGCAAGAGCAGGAGAGCTGGTACGGAGACTTGGCTGATTTATTAAGCAAAGGAAAAGTGTGTGACAGCACCGTTTCTAATTCGGCATCCTCTCTGGTAGGCTTCGACGAGGGAAATTACGGAATGATTACACCGGTGAATGCTGCTTATAAAGAGGTATGGCAAGTGAACCTTAAAGCAAAGGGACTTGGGCAGAGCAGAAATATCACTGGAGTTTTTAGGCTGTGTTTAACAAGTCGGACTATTAGTTTTGTGAAACTTAACTCCGAGGTGGCATCAGTTACCCTACAGTTGATGAATATTCGTAGGTGTGGGCACTCTGATAGCTTTTTCTTTATTGAAGTTGGAAGATCAGCCTCTACTGGACCTGGAGAACTGTGGATGCAAGCAGACGATTCTGTGGTGGCACAAAATATACAtgagacaattttagaagctATGAAAGCAATGAAAGAGCTGTCAGAGTTCAGACCCCGCAGCAAAAGTCAGTCATCAGGATCAAACCCCATTTCTGTACCCACTCGTCGGAACCTAAACAATTTACCTCCAAGTCAAACAGGGCTAGTGAGGAGGTCAAGGACGGACAGTACAGCAGCCACATCTCCCGTGACCAAATTTTCTTCTTGTCGAATACGGACTGCAAGTGAAGGGGAAGGTACCATGATCAGGCCAGTCTCTGTATCAGTATCTGAGAATGGAAGCCCAATGACTGTTGGCCGGCACCACATGAGTAGATCTAATACTGTTTCAGTAGGCTGTCGGACATCAGAACCATCACTACTTAATCACAGCAGGTCCATGTCTATGACCATGTACCACTCTCCCCCATCTGTTGTAAGTCCACTAAGTTTGTCTTCAATCAGTATGAATGGTTCTATCTCAAACAAAGCACACAGACCTTCCAGCTGTAGTGGTTCTGTTTCTGGGTCACCAAATGATTTTGGCTTTTTAACGTGTGAGGATTACAGTTCCAGCCCAGGGGATGTGAGGTACAACCTAGCAAACAGGAGTGACACTCCTTCTTCTCTGTCCAGCACACCACCCTTACGAGAAACCAGTGAACTCCATAGTTATATGGTGATGGACAGGCCATCCAACTTTTCACAGAACAAGACTAGCAGAGACATGTTGGATGTGGAGACATACAGGAAGAGGACATATTCTCTAACAACCCCACGGCAACAGATGGCACACTCCCAGTTATCTTCAGCGTCACTTGATGAATACATGTTGATGAGGGCTGCGAACAGCCACTCTGGACGGAGCACAAATTCTGCTTCTCCTAAACTTTCATATCCAGAAGATTATGGGGACATTGAGATAGGCTCTAACTGTAATGTGGGTGATGATGGCTACATGCCAATGACACCAGGCATGGCACCTCAGAGTGCAAAAAATGACCACTACATGCCAATGAGTCCCATGAGTGTTTCAGCACCCAAGCAGATCATTAACCCGAGATCTCATCCACAGTCTCCAGGCAGTGGCTGCACAGCTAACTCCCCCAGCAGTGGATCTCTAGAGGACAGCGGGTACATGAAAATGTGGTCCGGATCCAAGTTTTCACTGGAGAGCTCAGATGGAAAAGCAGCGAATGGAGAATATGTGAATATGTCACCTGTTGACACATCCATCTCACCCACACCACCAGAATATTTTATGGGTCCTTGTGAGCCAACACAACGGCCCTCCCCAACTCAAAGTATTCGCTTCAATAAGCAACAGGTGCCTAAAAGAGTAGATGATAACCAGTATGTTTTCATGAGTCCTCAGAACCAAAATCAAACCGAAGAGGCCAACAGCGTTTCTTCTCTGCCCCCTCTCTATCGCCCTGATGTAATGGCACAGAGATCAAAGGTCAACAGGCCCAATAGGTTATCTCTAGACGCTCTAAGGATGCTTCCAAGGATGACTGAACATCCGCTACCATGTGAGCCTAAAAGCCCTGGAGAGTACATAAACATAGACTTTGCTGCTGCTACTCAGTACTCCTCTCAATCTATGGTCACTGTGGAAAATCAGGCCTCACTGTCCAGCCTCAGACAGGGATCTCCGCTCTCAGACTACATGAACCTCAACCAGAGTTCACACTCTTCTAAACTGTGTGAAATGAGTAGTCCCCTCGATGGACTGCCAGAGCTGGCTGAATGCCCGCCTGATGATGGGACTTGTTTTCTCAACGAACAGAGAAACTTACCATGCCCCTCTGTATCAGGAAAAGGTAATTACACTGAGATGAGCTTCAACAGTGGTTCCCTTGAAAATCAAAAGAGTGCTTCAGTCAGCCCCACTAGCAGGGttcaaaggcttaacttgggCAACCAGGGGGTTTCAAAAGGAATTGGCGCTTTCTTGTTAGCTGCCTCCTCTGTAGATCCAAACGGAGGAGCAAAGGTGATTCGAGCAGACCCCCAGGGCCGGAGACGGCATAGCTCTGAGACCTTTTCATCCACCACCACAGTTGCACCGGTCTTTCCCTCTTTTGCACACAATGTTAAGCGACACAGCTCTGCCTCCGTAGAAAACATCTCAGTACGAAGCAGTGAAGGTTCTGATGAGGAGTATGAGTCTCCTATGTGCCAAGAAATGTCAGCTGGTTATCAAAATGGGCTCAATTACATCGCCTTAAATCTCATGGAGAAACAAGAGACTGGCAATTGTGAAAATCTTGTGGGCTTTAAGACTGGCGGTTGTTGTAAAGCAGGAATAAATGGATTACACACAACTCCCTATGTGTGTCTTGGATTCAAAGAAACTGCAACCACTGTACAAGaTTGAGCAGGAAGCAGAGGTTACTCCTAATGCTAAGGGAAAATGGAAGCTCAACCATTAACTGGACTGAACTGGTTTGGTCTGGACTATGCTGCTGTAAATGAACCGTGACCTTTGCACCTCATCTTAAAGCTGAACGTCAGATGGATGTGTTGTGAAAACTCCTACAAGGACAATGTGTTACTCCTGTTTTTCCAATCTGCACCAATTTTTAAGCTGCTGCTCTTTTGTCATGAAATGTCATGAAATGAACTTTTATTGATGTTGTGAAAACCTTTAGtttaattttgaaaatgtattgcgTTATGATTTATTTTGCAATCTGTAAACTTATTTACCTGACCTAAATATCTGAAAGGTACCATTTGCCCTGTTGTACGAATTGCCACGTGTgtcattttagttatttaaaaagaTTAGATTGAAAAGAAATCTATAAGTCCTCCCTGAGGAAATGATTTGTACTAATGCATGCATTTCAGAAGAgataaacaatcattttaatttgaatgttCTCATATGACCAATGCCTTACTCTCTTTGTTGACAAATTTATGACTTCTTATCTGGACCTAAACAATGAGAACATTTATTATACAACtctatttttctaaatatttagtttattaacTAATCACTTAATAAGTTGCTACTTGAGAGCCCCTTTTTGATATGGAGAATGTTTTGCCACCTTCTTACAGCAGGTGTGGTTACTGCacatgatatttaatatttacacaaatGATCTATTTATGACCATGGTCAATCTTTTGCTCCTATTTTTTCACAGATTAATTGTCACCTAAATCATAGCTTTTTTTTGTTCGACGGCCTCATTTCACATGAATATATTTGAATTGTAATATAATGTATGGTAACAGTGACTGCTTCCCATTCCGACAGCATGTTGCCAGTTAACTTgccaagaataaaaaaataaaa

Function

GO:

id name namespace
GO:0008286 insulin receptor signaling pathway biological_process
GO:0001666 response to hypoxia biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0005158 insulin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-975 Predicted to enable insulin receptor binding activity and phosphatidylinositol 3-kinase binding activity. Acts upstream of or within response to hypoxia. Predicted to be active in cytosol and plasma membrane. Is expressed in germ ring; head; and liver. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human IRS2 (insulin receptor substrate 2).

Ensembl:

ensembl_id ENSDART00000053924

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000591 lncRNA upstream 26271 29183972 ~ 29185269 (+) True XLOC_000342
TCONS_00000585 lncRNA upstream 30892 29174195 ~ 29180648 (+) True XLOC_000340
TCONS_00000588 lncRNA upstream 31606 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000587 lncRNA upstream 31606 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000577 lncRNA upstream 140184 29068649 ~ 29071356 (+) False XLOC_000337
TCONS_00000595 lncRNA downstream 83134 29311527 ~ 29312559 (+) True XLOC_000346
TCONS_00000596 lncRNA downstream 216059 29444452 ~ 29445719 (+) True XLOC_000347
TCONS_00000597 lncRNA downstream 223072 29451465 ~ 29452733 (+) True XLOC_000348
TCONS_00002842 lncRNA downstream 271915 29500308 ~ 29501034 (+) True XLOC_000349
TCONS_00000598 lncRNA downstream 279254 29507647 ~ 29508473 (+) True XLOC_000350
TCONS_00000590 mRNA upstream 8851 29183962 ~ 29202689 (+) False XLOC_000342
TCONS_00000586 mRNA upstream 31610 29178117 ~ 29179930 (+) False XLOC_000341
TCONS_00000589 mRNA upstream 32007 29178331 ~ 29179533 (+) True XLOC_000341
TCONS_00000582 mRNA upstream 46629 29140884 ~ 29164911 (+) False XLOC_000339
TCONS_00000584 mRNA upstream 47190 29162478 ~ 29164350 (+) True XLOC_000339
TCONS_00000593 mRNA downstream 39448 29267841 ~ 29271473 (+) True XLOC_000344
TCONS_00000594 mRNA downstream 53371 29281764 ~ 29391034 (+) True XLOC_000345
TCONS_00000599 mRNA downstream 286767 29515160 ~ 29519002 (+) True XLOC_000351
TCONS_00000600 mRNA downstream 435943 29664336 ~ 29743640 (+) False XLOC_000352
TCONS_00000601 mRNA downstream 510029 29738422 ~ 29743635 (+) False XLOC_000352
TCONS_00000579 other upstream 131204 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000565 other upstream 1209603 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other upstream 1215929 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000557 other upstream 1480560 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 3091916 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000608 other downstream 603366 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 937560 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 998998 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 1727532 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 1828847 31057240 ~ 31063850 (+) True XLOC_000367

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_00439527_00443722.mRNA False 4242 mRNA 0.47 2 CI01000049 439037 ~ 444303 (+)