XLOC_000342 (cars2)


Basic Information

Item Value
gene id XLOC_000342
gene name cars2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29183962 ~ 29202689 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000590
AAGAAGATGACCATGAGTTGAGTTTAGAGCGATTTAATTTTATCAGTAATGCACCGACCGAGATGCTTACATATTTTTGCAATGACAGGTCGATGAGGTTATAGCCTATGAACCAACTGCAAAATCTAAACATCTAAAATGCGTTTAAATGTCTTGTTATATTGCGGTTTAAGGTCATCTCAGTAACGCAATCTTTTAAACTCTATTCAAATACTTTGCGTTTTACGAATGTAACTTAGGATGACAATGAGGCTGGCTTCAGCACTGATACTTAATTCTGGCTTTAGAATCAGGCGTGAAATTCATAGTGGAGTTACAAAAACGTCATTACTGTGCCGTCGTACTGCATGCAGCAGGACGGAAAGAGGGTGGGTAAAACCAGTGGGTTTTGACACCGGTGTAACGGCTTACAATAGTCTTACCAAGAAGAAAGAACCTTTAATTCTGTCACAAGAAAAAATTGCTACCTGGTATAGCTGTGGACCGACTGTTTATGATCATGCCCATCTGGGTCATGCGTGTTCATATGTCAGATTTGATATTCTCCAAAGGATATTATCAAGACTTTTTGGAATTAATGTCATTCATGTTATGGTCATCACTGACATTGATGATAAAATCATACAAAGAAGCCTTGAGGAGAACATCTCACCCATCACTCTTGCAAGAATGCACGAGGAAGAATTTAAAAAGGATATGCTAGCACTGCGGGTTCTTCCTCCCGTAGTATATATGAGGGTGACAGAAAATATACCTCAAATTATAGCTTTTATAGAGCGTATTATTGGAAATGGACATGCCTATGTCACAAGTCAAGGGAATGTCTACTTTAACACGAAGTCTATTAGTCATCGTTATGGCAAGCTTGTCAATCTTGGAGGAAATGCTGGGGAACAGGgGGTTCAGGACAAAGAGAATTCAAGAGACTTTGCTTTGTGGAAAGCATCCAAACCATTTGAACCTTACTGGGAGTCACCTTGGGGACAAGGAAGACCTGGGTGGCACATTGAATGTTCCACAATTGCTAGCTCAGTGTTTGGACATCAGCTGGATATACACTCTGGAGGGATTGACCTTGCCTTCCCACACCATGAGAATGAAATTGCCCAGTCAGAGGCATATCATCAGTGTGAACAGTGGGGAAACTACTTTCTACACTCTGGGCACCTTCATTTAAAAGGAAGTGTAGAGAAGATGTCAAAATCCTTGAAGAATTATGTAACTATAAAGgatTTTCTGGCATCTTATACTGCTAATGAGTTTCGACTTTTCTGTCTTCTGACCAAATACAGATCAGCAATCGACTATAGTGATGCTAGCATGAATGAAGCCCAATCTACACTGTCCACCATCTCTGCCTTCTTCCACAATGCACAGGCCTACATGCAGGGCCACATGCAGTGCCAGCCTGTAGAGGAAGGATTTCTCTGGGAGAGGTTGTCTAATACTCAGACCAGTGTTCATAAAATGCTTGCCGATGACTTTGACACACCAAAAGCTGTGGATGCCATCATGAGTCTCATTTACCATGGCAACTGTCAGCTTCAGCCTGCTACTAAGGTGGATGGGCCTAGGAGTCCTGCTGTATTTGGAGCCATAATGTCCTATGTTATGGAAATAATGAGTGTTTTTGGAGTGGATCTATCAGACAAAACGGAAGTCCAAGTTTCCTCTGGAGTTTTGAATAATGTTGTGGAGGAGTTGGTTCATTTTCGGAGTGAAGTTCGTAAATTTGCTCTTTCTGTGGAAGACCAAGCACCACAGGAATCCCAGACTGGCAATAAAAATCAGAAAAGGCATCATCAACCAGACAGATTACACTTAAGCTTACTGAAAGCGTGTGATGCCTTAAGGAATAATCTAGCACCCCTTGGAGTCCACATTAAGgaTAGAGGCACCAACTCCACGTGGGAGGTAACAAAGGCAGAGACGAGGAAGTAGTCCCTAACTGAATTTTAACAAACTGTATTGATTAGGACTCAGTTTAAGcgctttaatttttttcttactaATGCAACTAAATCTGGAAAGCAcatttatgtattattgtcattttcaataaatctgttaaatgtttatcataaacttttgaTACAACTTCTGTAGCAGTAAAGTGTATTAGGACAGGGTCATGAAGTTACTAAAGCAAAGCATTTTAATAGGTGCCATTAGCATATAAAACTTAAGCAAAATTACACATTGTTTTTCAGTTAGCTGATTTTTACTCAAATGTTTC
>TCONS_00000591
CCATGAGTTGAGTTTAGAGCGATTTAATTTTATCAGTAATGCACCGACCGAGATGCTTACATATTTTTGCAATGACAGGTCGATGAGGTTATAGCCTATGAACCAACTGCAAAATCTAAACATCTAAAATGCGTTTAAATGTCTTGTTATATTGCGGTTTAAGGTCATCTCAGTAACGCAATCTTTTAAACTCTATTCAAATACTTTGCGTTTTACGAATGTAACTTAGGATGACAATGAGGCTGGCTTCAGCACTGATACTTAATTCTGGCTTTAGAATCAGGCGTGAAATTCATAGTGGAGTTACAAAAACGTCATTACTGTGCCGTCGTACTGCATGCAGCAGGACGGAAAGAGGGTGGGTAAAACCAGTGGGTTTTGACACCGGTGTAACGGCTTACAATAGTCTTACCAAGAAGAAAGAACCTTTAATTCTGTCACAAGAAAAAATTGCTACCTGGTATAGCTGTGGACCGACTGTTTATGATCATGCCCATCTGGGTCATGCGTGTTCATATGTCAGATTTGATATTCTCCAAAGGATATTATCAAGACTTTTTGGAATTAATGTCATTCATGTTATGGTCATCACTGACATTGATGATAAAATCATACAAAGAAGCCTTGAGGAGAACATCTCACCCATCACTCTTGCAAGAATGCACGAGGAAGAATTTAAAAAGGATATGCTAGCACTGCGGGTAAATCaccattttttgtgttaatatttCCTGAAATGTTAATACGTCttacaattttttgtttgtttgtccagGTTCTTCCTCCCGTAGTATATAT

Function

symbol description
cars2 Predicted to enable ATP binding activity and cysteine-tRNA ligase activity. Acts upstream of or within gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 27. Orthologous to human CARS2 (cysteinyl-tRNA synthetase 2, mitochondrial).

GO:

id name namespace
GO:0021828 gonadotrophin-releasing hormone neuronal migration to the hypothalamus biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006423 cysteinyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0004817 cysteine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5564 Predicted to enable ATP binding activity and cysteine-tRNA ligase activity. Acts upstream of or within gonadotrophin-releasing hormone neuronal migration to the hypothalamus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 27. Orthologous to human CARS2 (cysteinyl-tRNA synthetase 2, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000078546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000590 False 2236 mRNA 0.40 15 29183962 29202689
TCONS_00000591 True 798 lncRNA 0.38 4 29183972 29185269

Neighbor

gene id symbol gene type direction distance location
XLOC_000340 BX908780.5 coding upstream 3314 29174195 ~ 29180648 (+)
XLOC_000341 si:ch211-198k9.6 coding upstream 4028 29178117 ~ 29179934 (+)
XLOC_000339 ankrd10a coding upstream 19051 29140884 ~ 29164911 (+)
XLOC_000338 cryaa coding upstream 83039 29096881 ~ 29100923 (+)
XLOC_000337 cbsa coding upstream 90400 29068649 ~ 29093562 (+)
XLOC_000343 irs2a coding downstream 8851 29211540 ~ 29228393 (+)
XLOC_000344 lig4 coding downstream 65152 29267841 ~ 29271473 (+)
XLOC_000345 fam155a coding downstream 79075 29281764 ~ 29391034 (+)
XLOC_000346 BX908780.2 coding downstream 108838 29311527 ~ 29312559 (+)
XLOC_000347 CT573186.1 coding downstream 241763 29444452 ~ 29445719 (+)
XLOC_000336 CU469541.1 non-coding upstream 279327 28903770 ~ 28904635 (+)
XLOC_000335 NA non-coding upstream 710549 28472199 ~ 28473413 (+)
XLOC_000327 NA non-coding upstream 2442813 26740115 ~ 26741149 (+)
XLOC_000325 NA non-coding upstream 2512752 26664689 ~ 26671210 (+)
XLOC_000348 CT573186.2 non-coding downstream 248776 29451465 ~ 29452733 (+)
XLOC_000349 NA non-coding downstream 297619 29500308 ~ 29501034 (+)
XLOC_000350 CR774189.1 non-coding downstream 304958 29507647 ~ 29508473 (+)

Expression


Co-expression Network