XLOC_000363 (gpr183b)


Basic Information

Item Value
gene id XLOC_000363
gene name gpr183b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30551777 ~ 30554973 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000620
GTAAAGCTCTATAAatgctttccggatgcactgtattttaCAAGGATTTTTGGGTTTTGggacaaaatatagaaatgacaATTTGATATGAATTAGTAAGGTTTACTTCTACCTTAAACATTGTTTCTTCTTATCCTGTCTGTTGACAAATCGAGCTCTCTGTGTTTTGCAGTTTTGAGCAGATGAGCCAAGACCATGTCAAATTTTAGTAAAATGAAGCAACAATGGTTAGCAGATTTCACAATAGTTTTCTTCAACGTGCAAAAACTTAAAATTGGTAAACTATCTTTTAAGTTAAGACTAGAAAATCTTATTTTTGCATTACAACTCGTAGATTCCTTGTATGAattctttggtaaaaaaaaaaattaaaataaataaaaagtctagATGTCTCAGTGAAAGCCACAAGATAATTTCAGTTCTCCATAAAGAGTTAAACATCCTCCCCACAACACTGAAAGAAGCAAAAGGAAAGTGACGAAAAGAGCAGCAGAAATGGAAAAAGAGGCAGGAAGAGACCACTTTCTCACGTTACACAGTCACATTTTAAAAGTGAGATGAGACTTAAAAAATAGCGAGAAAGAATAGCATTGATGTCTAACTGAAAATCTGCTTTATGCCATCTGTGAGGTCTCCTGTTTATAACTATGATGAGTCCTGATTTAGACCTGAACTTCTCTTCCAACTGCAACTTGTATGATCATCGTCCAGTGGCCCGGGTTCTCATACCACTGGTCTACTCCATCATATGTCCAGTGGGACTCTTAGGAAATGCTCTGGCTCTCCATGTGGTGATCTCCAGCACCACCAAAATTAATTCAATCACGCTTTATTCCGCCAACCTGGCTGTGTCTGATATCCTATTCTGCCTGTCGCTTCCTCTACGAGCTGTTTACTATGGATTGGGTTTCCACTGGCCGATGGGAGAAGTACTGTGTAAAGCCATAGCACTGCTCTTCTATTTGAACTGCTACGCTGGTGTGAACTTCATGACATGTCTGGCGGTGGACCGTTTTGTGGCGCTAGTGTTTCCTGCTAGACTGGCAAAACTGAGAAAGGCAAAAAATGTACGCTTTGTGTGTCTGGCAATATGGCTGCTGGTGCTGGCCCAGACGCTGCCCCTGCTAACAATCGGCCTTACTAAAACCGAGCCTGACAGCAGCATCACCTGTATGGAATACCCCAATTTTGAGGGTGTTTTCAAAGGGCTGCCCTACATGCTGATCGTAGCAGTAGTTTTAGGTTTTGGCATCCCAGTGATGACAATCATCGCTTGTTATTCAATCCTGACTCACAAACTACATCAAGCGGCAAAGTCAAACCAACTGACAGAACGTTCCGGAAAGACCAAAAAAGCCAGAGGAGTGATTGCAGGCGTGGTATTTGTGTTTGTGGTTTGTTTCAGCCCATATCACATAGACATCCTGCAATACATGATTCGGAAGCTTCTCTATGAAACGGACTGCAAGGAACTGCAGTCGTTTCAGATCTCTCTACATATCACGGTGTGCCTTATGAACCTAAATTCCTGCTTGGATCCCTTCGTTTACTTCTTTGCATGTAAAGGCTATAAGCAAAAGGTAATGAGGATGATGAAGTGGCAGGTTGGCACCCACTTCTCCAGTGTGAAGAACTCTGCTGAAAGTTCAGGCACAGGTGATGTGCTCGGAACACGCCGCAACAATAGGATAATAATGAACAATGTTGGAGAGGATCAGCAGATTTGTTATCAACCAAGCGCAACATAA

Function

symbol description
gpr183b Predicted to be located in plasma membrane. Orthologous to human GPR183 (G protein-coupled receptor 183).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-74 Predicted to be located in plasma membrane. Orthologous to human GPR183 (G protein-coupled receptor 183).

Ensembl:

ensembl_id ENSDARG00000074302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000620 True 1751 mRNA 0.42 2 30551777 30554973

Neighbor

gene id symbol gene type direction distance location
XLOC_000362 tmem41ab coding upstream 113741 30422143 ~ 30438036 (+)
XLOC_000359 vps8 coding upstream 241088 30083578 ~ 30310689 (+)
XLOC_000361 BX255890.2 coding upstream 324272 30227391 ~ 30227505 (+)
XLOC_000360 dre-mir-740 coding upstream 385712 30165953 ~ 30166065 (+)
XLOC_000358 NA coding upstream 472248 30074635 ~ 30079529 (+)
XLOC_000364 bora coding downstream 168407 30723380 ~ 30735478 (+)
XLOC_000365 BX548015.2 coding downstream 298996 30853969 ~ 30859524 (+)
XLOC_000366 metap1d coding downstream 391258 30946231 ~ 30974165 (+)
XLOC_000367 itga6b coding downstream 464192 31019165 ~ 31064706 (+)
XLOC_000368 eef1a1l2 coding downstream 555844 31110817 ~ 31130222 (+)
XLOC_000350 CR774189.1 non-coding upstream 1043304 29507647 ~ 29508473 (+)
XLOC_000349 NA non-coding upstream 1050743 29500308 ~ 29501034 (+)
XLOC_000369 NA non-coding downstream 586146 31141119 ~ 31144527 (+)
XLOC_000370 NA non-coding downstream 799612 31354585 ~ 31359319 (+)
XLOC_000371 CT573247.1 non-coding downstream 964266 31519239 ~ 31520972 (+)
XLOC_000380 NA non-coding downstream 1455289 32010262 ~ 32011794 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_01312448_01313521 GPR183B coding CI01000049 null 1311994 ~ 1315089 (+)