XLOC_000371 (CT573247.1)


Basic Information

Item Value
gene id XLOC_000371
gene name CT573247.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31519239 ~ 31520972 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000637
CTGGAGTTAAATTTTTAGAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCGTTGTGAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGGGgCCACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGATTTGACTGTCCTGCAGCAAGGGGCTGTTGAAGTGCCCTCCTCCCCAAGTCTGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTGtccaaaaaaatAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTAAGGAGtatgacaagatatttttttgctgcttttgaTTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTTACTAAGCCATTGGTTTTAGTTGGCACTAGCTGCTAACATAtattaattgtaaatgttttgctGTTAGATTTAATGCTTTGATGACAATTAATTTCAAAGTGTGTACATCGATGGAAATTCTAAATCTAATGTGTGGATTTGCATGAATAAAAGCAGTAAGTAAAGAGTATTGCATCAGTTCAgtcatt

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0055001 muscle cell development biological_process
GO:0006413 translational initiation biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000637 True 846 lncRNA 0.38 6 31519239 31520972

Neighbor

gene id symbol gene type direction distance location
XLOC_000370 NA coding upstream 159920 31354585 ~ 31359319 (+)
XLOC_000369 NA coding upstream 374712 31141119 ~ 31144527 (+)
XLOC_000368 eef1a1l2 coding upstream 389017 31110817 ~ 31130222 (+)
XLOC_000367 itga6b coding upstream 454533 31019165 ~ 31064706 (+)
XLOC_000366 metap1d coding upstream 545074 30946231 ~ 30974165 (+)
XLOC_000372 slc2a15b coding downstream 52253 31573225 ~ 31598417 (+)
XLOC_000373 fgf8b coding downstream 117302 31638274 ~ 31669901 (+)
XLOC_000374 poll coding downstream 136870 31657842 ~ 31672343 (+)
XLOC_000375 wbp1lb coding downstream 153325 31674297 ~ 31699955 (+)
XLOC_000376 as3mt coding downstream 185696 31706668 ~ 31722875 (+)
XLOC_000365 BX548015.2 non-coding upstream 659715 30853969 ~ 30859524 (+)
XLOC_000361 BX255890.2 non-coding upstream 1291734 30227391 ~ 30227505 (+)
XLOC_000360 dre-mir-740 non-coding upstream 1353174 30165953 ~ 30166065 (+)
XLOC_000380 NA non-coding downstream 489290 32010262 ~ 32011794 (+)
XLOC_000381 NA non-coding downstream 490908 32011880 ~ 32012378 (+)
XLOC_000383 BX901898.1 non-coding downstream 496465 32017437 ~ 32018115 (+)
XLOC_000386 CU462859.1 non-coding downstream 993017 32513989 ~ 32514104 (+)
XLOC_000388 CU915272.1 non-coding downstream 1185137 32706109 ~ 32706227 (+)

Expression


Co-expression Network