RNA id: TCONS_00000641


Basic Information

Item Value
RNA id TCONS_00000641
length 2102
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_000374
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31657842 ~ 31672343 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTAGATCCGTTTAAAAACATTAGTGTCGTGTGTTGTTCTCGGAGAGAGGATTTGAAAGGGCTCCAGATCATCTCCCTGTTCGGAATGGAGGGTCATGGCCATGGAATTCTAAAGGCTTTCCCTAAAGTTAAGAGAGCCAGGCCTAATGACCAGAAGGACGCGCCTCCTTCCAAGAGGACTCCTGCTGAATCAATAACACTAACAGGTACAGTTTTCCAGGGAGTCACTATATACATAGTTCCAGCTGGTATAGGGAAAGCCAGGTGTGATATATTCCATCGGCAGATCACCCAGAATGGAGGACAGGCAGTCTCCACATTCGCTCCCAGCTGCACACATGTGGTGGTGGATGATTCAGTTGATTTTAAGAGAGCTCTGAGACTTCTGAAAGTAGATACACTGCCATCTGCTGTTCATTTGATCAAATGCACTTGGTTGAGTGCCTGCATCAGTGAGAAGAGATTACTAGACACTGAAGACTACAGCCTCCTTCCTCCTGAGAGTCCCACAGTTGCTGCCGCTGAGAAGTCAAATGAAGCAACAATCCAACCAGTTCCAGAAGTAGCAGCACAGGATCCATTGCAAATCCTTGACAATCTGGATCCTCATGAAAATCTCACAGAGACTATACCACCAGAGACTCAGGAGGAGTACCACGAGGAAGACGGTGTATCTCAAAATGACCTGGAGGCCTTGATCAGTGGTGTTCATCCATCAGAGAGCAACCAAGACCAGAAGCAGAGCTCAGCTGACAAGCCAGTTTTGCCTGGGAAATGGGTCTGTTCTCAGCCATCCACAACGAAAGGGGAGAACCATAACAAACACCTCACTGACAAACTAGAGCCGCTGGCCAAAGCCTATACGCATACGGGTGATAAATGGAGAGCTCTGGGCTATTCTAAAGCCATCAACGCCCTTAAGAGCTACCACAAGCCCATCACTTCATATGAGGAAGCATGTAAGATCCCAGGCATTGGTAAACGCATGGCGGACAAGATCATGGAAATCATGGAAAGTGGGCACTTGCGTAAACTGGATCACATTGGGGAGGAAGTGCCTGTTCTTGAAATGTTCACTAACATCTGGGGCGCTGGAGCCAAAACTGCTCAGATGTGGTATCAACAgGGATTTCGCACATTGGAGGACATTCGCACTAAGGCTGTTTTGAACCACACTCTAAGGATTGGACTAAAACACTATGACGATCTCCTCGAGCGGATGCCGAGAAGTGAAGCAAATGCCATCGAGAAAACGGTGAAGGACGCAGCTCACAGTGTGGACCCACAGCTGCTGACCATGGCGTGTGGTTCGTACCGCAGGGGCAGGAGCACATGTGGAGACGTGGACGTTCTCATCACCCACCCTGATGGACAATCACACAAGGGGGTTTTCAGCAAAGTATTGCATCTCCTTCATCAGAGTGGTTTCCTGACTGATGACCTTGTTAGCCATGAGGAGAACGGTGAGCAGAAGAAGTACATGGGAATCTGTCGGCTTCCAGGTCCTTCACAGCTCCACAGGAGACTTGACATCATAGTTGTGCCCTATTCAGAATTTGCATGCGCTCTTTTATACTTCACTGGCTCCGCCCACTTCAACCGATCAATGAGGGCATTGGCTAAGACTAAAAACATGAGCCTATCAGAGCACTCGCTGAACTGTGCAGTCATTCGGCAGCGTGGCGTGAAATTGGTTGCGGGAACTCCTTTACACACGCCGACAGAGAAGAATGTATTTCAACACCTGGGCATACCTTACAGAGAACCACACGAGAGAGACTGGTGATGATGAGGCAAGATTTTCTCTGTTTGCATGTGACTGCAAGTTTTACATCGGATGCCATCATGATTTTATgaaatcatatttgttttttttaaagtggatAAATACAAAGGGTTACAGATAAAATGAATTTGAATTTTTATCATGGTATTTAAAGGAATTTGTGTTTTTAAGTAACATTATGCTGGATGATTTATGCtgcttaaagtattaaaagtataTAATATTGCTTCTTTTATTTTGTCAAAGATATCAACCTTTACTTGTGGTTTCATTGTGGTATTATAATCTATTATTAAAGGCCACCTTTAATATCTAA

Function

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0034061 DNA polymerase activity molecular_function

KEGG:

id description
ko03410 Base excision repair
ko03450 Non-homologous end-joining
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2712 Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA biosynthetic process; DNA repair; and DNA replication. Predicted to be active in nucleus. Is expressed in head. Orthologous to human POLL (DNA polymerase lambda).

Ensembl:

ensembl_id ENSDART00000057880

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000637 lncRNA upstream 136870 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002847 lncRNA upstream 298523 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA upstream 298523 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA upstream 298523 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00000636 lncRNA upstream 513315 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00003083 lncRNA downstream 337919 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00002849 lncRNA downstream 339537 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00000651 lncRNA downstream 345094 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002850 lncRNA downstream 1845459 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 2024998 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00000639 mRNA upstream 14340 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000638 mRNA upstream 59425 31573225 ~ 31598417 (+) True XLOC_000372
TCONS_00000633 mRNA upstream 527620 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA upstream 527620 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000635 mRNA upstream 528238 31113951 ~ 31129604 (+) True XLOC_000368
TCONS_00000643 mRNA downstream 1954 31674297 ~ 31699955 (+) True XLOC_000375
TCONS_00000644 mRNA downstream 34325 31706668 ~ 31722875 (+) False XLOC_000376
TCONS_00000646 mRNA downstream 52811 31725154 ~ 31799359 (+) False XLOC_000377
TCONS_00000647 mRNA downstream 52958 31725301 ~ 31779857 (+) True XLOC_000377
TCONS_00000648 mRNA downstream 192061 31864404 ~ 31867717 (+) True XLOC_000378
TCONS_00000632 other upstream 593992 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 692838 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 1430337 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 1491777 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1797469 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000645 other downstream 34326 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 379270 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 841646 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1033766 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 1542898 33215241 ~ 33216718 (+) False XLOC_000390

Expression Profile

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