RNA id: TCONS_00000643


Basic Information

Item Value
RNA id TCONS_00000643
length 1539
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_000375
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31674297 ~ 31699955 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAGCTCATGCTGCTGCTGCTCCACTGCTCTGCCTCCCCTCATGACCCAATAAACGGCAGAAGGAGAGTAGGAGGCGGGCGGTGTTCGAGTGACAGCCTTTTACGGTTTCGATTCGATTAACGAACAATAAGTATAGTTACGAGACTAACGCTGTGACCAAAGTCAACACTGAGACATTTGTAATGGTCCGCTAGTCTGTTTAAAATGGGCTTGTTTTTATACATCGCTGGGTCGGCCAACCCCACCGAGGCCACAGTCTATGAGcAGGTACTTCACTGTGAGGGTGTGAATAATAAGAGCTATGTGTGTGAATCAGGACACTGTTGTGGAGAGTCCCAGTGCTGTAGCTACTACTATGAGCTCTGGTGGTTCTGGCTGGTTTGGGCCATCATCTTTATCTTGAGCTGCTGCTGTGTATGTCATCACCGTCGCACCAAACACAGACTACAACAGCAGCAGCGACAGCACGAGATTAACCTCATTGCCTACAGAGAGGTTCACAACCACACATCTCTGCCCTTCTACTTCAGATTCCTACCCAACTCTCTCCTTCCAGAATACGAAGAGGTGGTGCATCGTCCTGCTACTCCTCCTCCCCCTTACAGCGCCTTAAGCAGCGGCCCTCCAACTTACAGCGGCCCTATAACCACAGACCAGCAGGATGTCCACTGCCCACCCCAACAGACCACTCCGGTGCCCCCTGTACCCGACACACCCAGCCTAGAAGAGATCCAAACCTCTGACGGCTACCAGCACAAAGACGACGACAAGGCTGAAATGCAGCTAGAGCGGAGCAGATCCACAGAAACCCCCCTGCCCCAAGATCAGTCTCCTGAAAAGCAGAACGAGTGCAGAAAAGAGCCGCTCAGGAATATGGCCATGCCTGAAGAGAAAGAGCGGATTCAGGGACGGCACCGTCGATTTACTGGGGACTCTGGGATTGAGGTGTGTGTTTGCGGACGAGGCTTAGAGAGTCACGAGCCTAATGAATTCGAGGGGCTTTTGAGTGAGGAGGATCAAGAGGACTCTGAGGACTTCTGTGAGGATTGTATCCTTCAGTCGTATGGAGAGGAAAGTCAAGAACTTCTTTCTCCCGAAAACCGAGTGGAGCGTGGAGCTTCGCCACTGCTTCAGTCTCATCCTGTTTGCCTCTATTTGCATACTATTAATGAACAGGAGGCTCCACATCAGAACAACACAGAATCTTAAAGCTGACTGCATGACTTTACTGATTTAAAGAAAGAAGGGGTGGCCGAGGTGTAAAGAAGATACAATATGCTGTGCAGAGACTATactgtgtatatttgtatataatgaTGTGATAGAAGCAATCGGATGCTCTCCGCCTTGGTTTTGTGTGCAAAGCATCttttaatgcagttttaaaaAGCTCAAAAGGGCCCAAATAAGCTCTACTCCTGTACCAGATGATGTGCCTTATgctaagttcagactgcatgattttcaaagtagtcgtgtcacagatgttttcaccaTGCATGACTATCttggctagcgttttgtcgctgctttgtt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-112 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human WBP1L (WW domain binding protein 1 like).

Ensembl:

ensembl_id ENSDART00000044214

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000637 lncRNA upstream 153325 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002847 lncRNA upstream 314978 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA upstream 314978 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA upstream 314978 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00000636 lncRNA upstream 529770 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00003083 lncRNA downstream 310307 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00002849 lncRNA downstream 311925 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00000651 lncRNA downstream 317482 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002850 lncRNA downstream 1817847 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 1997386 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00000641 mRNA upstream 1954 31657842 ~ 31672343 (+) False XLOC_000374
TCONS_00000642 mRNA upstream 2270 31658011 ~ 31672027 (+) True XLOC_000374
TCONS_00000640 mRNA upstream 4396 31643223 ~ 31669901 (+) True XLOC_000373
TCONS_00000639 mRNA upstream 30795 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000638 mRNA upstream 75880 31573225 ~ 31598417 (+) True XLOC_000372
TCONS_00000644 mRNA downstream 6713 31706668 ~ 31722875 (+) False XLOC_000376
TCONS_00000646 mRNA downstream 25199 31725154 ~ 31799359 (+) False XLOC_000377
TCONS_00000647 mRNA downstream 25346 31725301 ~ 31779857 (+) True XLOC_000377
TCONS_00000648 mRNA downstream 164449 31864404 ~ 31867717 (+) True XLOC_000378
TCONS_00000649 mRNA downstream 243006 31942961 ~ 31979510 (+) True XLOC_000379
TCONS_00000632 other upstream 610447 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 709293 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 1446792 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 1508232 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1813924 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000645 other downstream 6714 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 351658 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 814034 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1006154 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 1515286 33215241 ~ 33216718 (+) False XLOC_000390

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_01872550_01884275.mRNA True 2284 mRNA 0.43 3 CI01000049 1872550 ~ 1885563 (+)