RNA id: TCONS_00000578


Basic Information

Item Value
RNA id TCONS_00000578
length 2845
RNA type mRNA
GC content 0.40
exon number 15
gene id XLOC_000337
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 29068649 ~ 29093562 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGAGGACGGTCGGTGCTCATATCAGCAAGGGAACTATTGAGGAATAATGCCTTCAGTCCCCTCCAACAAAGAGAATGACACCTCTCCCTGCCCTATTTTGGGCAAAAACCTCAGTGGCACGAATAATGTAGATAAGAAGTTGGGTGCGGATGATGGAGACAGACCCCCACAGCTGAATAAAGAAATTGCCACTGCTGACCCTAAATGGATTCGTCCTGACCTGCCAAGCAGATGTACATGGAAACCAGGAATGTCTCATGAAAATTCCCCTCACACATACTTTCCCAGGACAAAAGCTGAGTGCATTCTACCCAACATATTGGGCAAGATTGGAGACACACCGCTGGTCCACATAAACAAGATCTCTAAGATATTTGGATTAAAGTGTGAACTTTTGGCAAAGTGTGAGTTCTTTAATGCTGGTGGTAGTGTGAAGGACCGTATTAGTCTGCGTATGGTGGAGGATGCAGAAAGGGAAGGCATTCTCAATCCTGGAGACACCATTATAGAGCCCACCTCTGGAAATACAGGTATTGGTCTTGCACTGGCTGCAGCGGTAAAGGGTTATCGCTGTATAATTGTTATGCCTGAGAAAATGAGCATGGAAAAGGTTGATGTGTTGAGAGCTTTGGGAGCAGAGATTGTCCGAACACCCACCAGTGCTCGGTTTGACTCCCCAGAGTCACATGTGGGAGTGGCTTGGCGCTTGAAAAATGAGATCCCTAACTCTCATATTCTGGACCAATATCGCAATCCCAGCAACCCCCTGGCTCATTATGACACCACTGCAGAGGAAATTCTGGAGCAATGTGATgGGAAAGTGGATATGCTGGTGGCAGGAGCTGGCACAGGTGGCACCATTACTGGCATCGCTCGGAAATTGAAGGAAAAGTGCCCAAATATTAAGATTGTCGCTGTGGACCCAGAGGGCTCAATCCTTGCTGAGCCTGATGAACTGAACCGAACAGATAAAAACCAGTATGAGGTGGAGGGCATTGGATATGACTTCATACCCACTGTTCTCGATAGATCTTTGGTTGACAAATGGTACAAATCCAAGGATGAGGAATCATTTGCCATGGCCCGAATGCTTATAAGAGATGAAGGGCTATTATGTGGTGGTAGTTCAGGCACTGCCATGGCAGCTGCAGTAAAATTTGCCAAAGAGCTGAAGGAAGGACAGCGGTGTGTTGTGATTTTGCCAGACTCAATTCGCAACTACATGTCTAAGTTCTTGAGTGATAAGTGGATGTTCCAGAAGGGCTTTCTAAGGGTGGAAGACATCATGGTGAATAAACCCTGGTGGTGGAATCTCAAACTACAAAGTTTAAACCTCTCTGCTCCACTTACTGTGCTGCCTACAGTCACATgccaaaaaactattaaaatcttGAAAGATAAGGGCTTTGACCAGGCACCTGTCGTAAATGAAGCTGGGTTGATTCTGGGTATGGTGACTCTGGGAAACATGCTTGCTTCTGTTCTAGCAGGAAAAGTCAAGCCTTCTGACCCCGTCAGCAAAGTGCTCTATAAACAGTTTAAGCAGATTCGTCTGACTGACAATATGGGAAAGTTGTCTCGGATCTTGGAAACTGATCACTTTGCCCTGGTGGTTCATGAGCAAATTCAATatcTTACAGATGGCTCCTCATCTCAAAAGCAAATGGTGTTTGGAGTGGTGACTGCCATTGATCTTCTCAACTTTGTGACTGCtcgagagaaaagagagagaactATGTCAGAAACAGCCGATGAATACTGAATGCTTTACATCCTGCTTCAGTCTGAATGTGATGCACTACCAAGATTCAACAATGGAGAAATAGATGTCATAAATTAGTTACATTTAAATTTCAGCATTAGGTCTGGTCTGCTTTTTACAACTTTATTTCTTGCTTATTTCTTTTCATCTTAAATTCAAAAGAATACAAAACATATGTAAACAAATCTAAAGTTACCTTGGAAAGCATCAGAACACTTCACTCTCACTTTAATTCAGCTCAGTCACATAGGGtcacattaggcacattcaaatcaagacttgaaacacatctgtttagctgcctttcctgaatgagcactgtgctacgtccgacagttTGCACTATGATGTCTTTTAtcacctgttttaacacattgtaaTCAGTTTGgatcatttttaattcttttaatcatttttattttatattttattttattcatgtttatgtaaagcactttgaaattCCATTGTGTATAGCatttgttatataaataaacttgccttgccttgcctaatccCTGATTTAGCAAGGGTTGCCCAGTGAActaaccaccaattactctggcatgtgGTTTATTATTAAGATTTCCTTCTAGCCCAAGCAtcaaaacagtttaaaataattttagataATTTTACTGTCCCAAgtttttgcatatttgttttaCTCATAACTGGCATTACTGTGCTTAAGTTTTCCTGCATAATTCTGATATAGTGCTGACATCAAAAATCACCGGTTGCACAACTTGCATTTATTaacaaagaagaagaagacaaatttgacctgtttttatttgacttgtttaatgtgattttaaagaGTCACTACATGACTTCTgcaaacaatcaatcaattaacagCACCCTGGATAAAGCATCACATTGTAAAGTGTCCAATGAGgtcaatttaattaatctttattattaatcaactggcatgttttatttatttgtcatatcCAATTATTGTTTGCATTTGCTGCTATAATTTTGGATGCTGTTTTTTAAACAACTACCTTTGCACCAAATTCTTTAAAGTAGTGCTTGTgtacaataacaaataaaaaattgtttagta

Function

GO:

id name namespace
GO:0071322 cellular response to carbohydrate stimulus biological_process
GO:0071326 cellular response to monosaccharide stimulus biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0071331 cellular response to hexose stimulus biological_process
GO:0071333 cellular response to glucose stimulus biological_process
GO:0070814 hydrogen sulfide biosynthetic process biological_process
GO:0050667 homocysteine metabolic process biological_process
GO:0019343 cysteine biosynthetic process via cystathionine biological_process
GO:0019344 cysteine biosynthetic process biological_process
GO:0019346 transsulfuration biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006535 cysteine biosynthetic process from serine biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0008238 exopeptidase activity molecular_function
GO:0008241 peptidyl-dipeptidase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0033293 monocarboxylic acid binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004122 cystathionine beta-synthase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-367 Predicted to enable cystathionine beta-synthase activity. Predicted to be involved in cysteine biosynthetic process. Predicted to act upstream of or within cysteine biosynthetic process from serine and cysteine biosynthetic process via cystathionine. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; mesoderm; musculature system; and nervous system. Human ortholog(s) of this gene implicated in coronary artery disease; homocystinuria; hyperhomocysteinemia; malaria; and neural tube defect. Orthologous to human CBS (cystathionine beta-synthase).

Ensembl:

ensembl_id ENSDART00000053932

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000576 lncRNA upstream 164019 28903770 ~ 28904635 (+) True XLOC_000336
TCONS_00003080 lncRNA upstream 595241 28472199 ~ 28473413 (+) True XLOC_000335
TCONS_00000568 lncRNA upstream 1032506 28031697 ~ 28036148 (+) False XLOC_000333
TCONS_00000570 lncRNA upstream 1032506 28031708 ~ 28036148 (+) False XLOC_000333
TCONS_00000566 lncRNA upstream 1073601 27977389 ~ 27995053 (+) False XLOC_000332
TCONS_00000585 lncRNA downstream 80633 29174195 ~ 29180648 (+) True XLOC_000340
TCONS_00000588 lncRNA downstream 84583 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000587 lncRNA downstream 84583 29178145 ~ 29179934 (+) False XLOC_000341
TCONS_00000591 lncRNA downstream 90410 29183972 ~ 29185269 (+) True XLOC_000342
TCONS_00000595 lncRNA downstream 217965 29311527 ~ 29312559 (+) True XLOC_000346
TCONS_00000575 mRNA upstream 873387 28089703 ~ 28195267 (+) True XLOC_000334
TCONS_00000574 mRNA upstream 1021412 28031892 ~ 28047242 (+) True XLOC_000333
TCONS_00000569 mRNA upstream 1021848 28031697 ~ 28046806 (+) False XLOC_000333
TCONS_00000581 mRNA downstream 3319 29096881 ~ 29100923 (+) True XLOC_000338
TCONS_00000582 mRNA downstream 47322 29140884 ~ 29164911 (+) False XLOC_000339
TCONS_00000583 mRNA downstream 47419 29140981 ~ 29142498 (+) False XLOC_000339
TCONS_00000584 mRNA downstream 68916 29162478 ~ 29164350 (+) True XLOC_000339
TCONS_00000586 mRNA downstream 84555 29178117 ~ 29179930 (+) False XLOC_000341
TCONS_00000565 other upstream 1066717 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other upstream 1073043 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000557 other upstream 1337674 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 2949030 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 3948449 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000608 other downstream 738197 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 1072391 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000618 other downstream 1133829 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000628 other downstream 1862363 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 1963678 31057240 ~ 31063850 (+) True XLOC_000367

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_00301547_00320863.mRNA True 3044 mRNA 0.44 22 CI01000049 301107 ~ 321118 (+)