XLOC_000323 (AL954695.3)


Basic Information

Item Value
gene id XLOC_000323
gene name AL954695.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26577288 ~ 26584593 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000534
CGAACAACTACAGTGAACAGTGATTTAACGACTTTAGCGACTTGTTTTGCATCTCAAATGGCAAATAACATGTCAGCTGTGTTTTTTACTCGAGTTAATTTGATTAAGCCTGTATTTGTCAACGATAATCATCAAAGTGACACAATGGCTTCTCCTACACCTCCTACCGTAATGAGAAGCCCAACAGAAAACCCAGAGAAAAGGAGGAAAGGGAATAAAGCTTCTGCTTTCTTTAAGAGAGCATGGAAGGCTGTAAAGCGCCCTTTCCTTTGCTGTGACTGGAACAGAGTGGTTTCCTTTGAACCACAGTCGGATATCGATGATTTCGAGCATCTGCCTGTTTCAGGTCCCTCCAGGACCGTCACAGCACATGCGGACCCTAAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGAACCTCAGCCgttgagtgttccgggcccctTCAGCATCAAGCAAACAGCAGATGTGCCAAATGCAGATCCGGCCCGTCCAGAGTCCTCAACGGCCCTCACAGATCATGTTGACCCTGAGCAGATATCCGGCCCGTCCTGAGTCCTCAACGGCCAAGACAGGTCATGTTGATACTGAGCTGGTGTGTCTACCAGGCCAGATCTGGGAAGATCCTCAGCCAATCAGTGTCCATGGCCTCACCAATATTAAGAACATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAACACCCCTCTAAAATTGATGGGACTGATGGTGAGTCATCTTGAATTTGGTTCATTTTATTTCTGCCATCTaaaaacccaagaaaggaaggaaagggaAAAAAGTCTCTGCTTTCTTTAAGAGAGTATGGAAGGCTGCAACGCGCCTTTTCCTGTGCTGTGACACAGATATAGTCCAGCAATTTACGCCACAACCAGAGCTGGAGGAAGCAAACCCTGAGGCAGTATGTCTGCCAGGCCAGGTTCCTGAGGAGCCTAAAGAGGCTTCTGGACCCACTCGTGgattTGATTTGTCTGATTTTGAAGTAGGAGCCGTGATTGGAGAAGGAGCTTTTGGCCAGGTGTTTGTGGCATCTCACAAACTTCGTAAAAGTGAAAAGGTTGCCCTGAAGTTTATCAACAAGAATGAAGACGACCGTTATCTTGACATTgatgGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAAGTTGATGAATGCTCCGCAATGTCCAAACATCATCGGATTACACGACTGGGTTGAGTATGAGAACAACTTCATTCTCAGTCTGGAGTACGCAGAGTCATGCCAGACCTTGGATCAGTACATCAACGATACAGTGGACGTTGGTGAAAAGCGAGCACGCCAGTTAATGTGTCAGTTGATCCAAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGAGATATCCACACGGAGAACATCCTGGTGACTCAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCGATGATTATCGAGGAGCTATTATATGCACGCCACCTGAGATTTTCATGGGCCCCATATTCCATGCTGACCCAGTAAACGTCTGGACAATTGGCATCGTGCTGTATGAAATATTGCATGCAGATTTGCCCTTTGATGACGAAGATTCAATAATGTTTCAATCCGCTGAGATACGCCCCAGGTTATCTACAGAATGCCAGGACATGATTTCCCAGTGTTTCATCCGTAATCCAGTTAACCGGCTAAAGTTACATGAGGTAGAAGAGCACCAGTGGATCAATCCAAAGACCCCAAATCCTGTGCTGCAGTTAGAAAAGATGAGaaaacaCTAAAGAAGCGAGAAAGGAGAGCAGCATTTCCAGAAATTTCACAAGACTATTAAAGTTATTAATtactccctcatgtcattccaaacccctaaGACCTTACTTTTCTTCAGTGTCAGTTCATGACGTGTGTTGATGAGAGCTCTGtcctgcactgtatatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgGGCTCTTCTGAACATGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttaatttctgttcTCAATATGAACTAAACATGAATATGAACTAAGGACATGAgctgagtaattaatgacaataatggtAATGAATGGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtgcccaaccgagcctggtttctctcgaggtttttttccttcacttttgtcaaatggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgtttggactttcagcagtgacaattaaactacactgaactgaactgaacttcaactgtgaaaactggactgacacagtttcaatttacttctatgttaggctgctttgacacaattcacattgtaaaagcgctatagaaatgaagatgaattgaactgaattaaagaTGAAACTCCATCAGGAAATCCAGTGCTGTCAGTTTTCTCCTCTAAAGTGTCATCAAAGATCTGCTCAACTATTTTCTACCTCATAAATGAATCTGGTGTTCTGTCATAAGAGAGActgattgttttataattaagTGTTCATGATTGTTTCGTAATGAATTGTTCTTTGAATTGTTTTGTGATGAATTgcttttatatattgttaaaaattcAGATAAAACCCTGTGAATCAAA
>TCONS_00002840
TTTACAAAAACGGTGTATTCCCatgcattatttaataaaaagtataataacaATGATATATTGCCATATAAGGCGACTTACCGACTTAAGAGtttagcaaactGCGTGAGAATATTATATTTAATAGGAGCCGTGATTGGAGAAGGAGCTTTTGGCCAGGTGTTTGTGGCATCTCACAAACTTCGTAAAAGTGAAAAGGTTGCCCTGAAGTTTATCAACAAGAATGAAGACGACCGTTATCTTGACATTgatgGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAAGTTGATGAATGCTCCGCAATGTCCAAACATCATCGGATTACACGACTGGGTTGAGTATGAGAACAACTTCATTCTCAGTCTGGAGTACGCAGAGTCATGCCAGACCTTGGATCAGTACATCAACGATACAGTGGACGTTGGTGAAAAGCGAGCACGCCAGTTAATGTGTCAGTTGATCCAAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGAGATATCCACACGGAGAACATCCTGGTGACTCAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCGATGATTATCGAGGAGCTATTATATGCACGCCACCTGAGATTTTCATGGGCCCCATATTCCATGCTGACCCAGTAAACGTCTGGACAATTGGCATCGTGCTGTATGAAATATTGCATGCAGATTTGCCCTTTGATGACGAAGATTCAATAATGTTTCAATCCGCTGAGATACGCCCCAGGTTATCTACAGAATGCCAGGACATGATTTCCCAGTGTTTCATCCGTAATCCAGTTAACCGGCTAAAGTTACATGAGGTAGAAGAGCACCAGTGGATC
>TCONS_00002841
GATTCAAAGGATTGGAGTCATCTATTTGATCCGTTTCATACCAGACAATCCAAtgtttcaggattTGATTTGTCTGATTTTGAAGTAGGAGCCGTGATTGGAGAAGGAGCTTTTGGCCAGGTGTTTGTGGCATCTCACAAACTTCGTAAAAGTGAAAAGGTTGCCCTGAAGTTTATCAACAAGAATGAAGACGACCGTTATCTTGACATTgatgGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAAGTTGATGAATGCTCCGCAATGTCCAAACATCATCGGATTACACGACTGGGTTGAGTATGAGAACAACTTCATTCTCAGTCTGGAGTACGCAGAGTCATGCCAGACCTTGGATCAGTACATCAACGATACAGTGGACGTTGGTGAAAAGCGAGCACGCCAGTTAATGTGTCAGTTGATCCAAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGAGATATCCACACGGAGAACATCCTGGTGACTCAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCGATGATTATCGAGGAGCTATTATATGCACGCCACCTGAGATTTTCATGGGCCCCATATTCCATGCTGACCCAGTAAACGTCTGGACAATTGGCATCGTGCTGTATGAAATATTGCATGCAGATTTGCCCTTTGATGACGAAGATTCAATAATGTTTCAATCCGCTGAGATACGCCCCAGGTTATCTACAGAATGCCAGGACATGATTTCCCAGTGTTTCATCCGTAATCCAGTTAACCGGCTAAAGTTACATGAGGTAGAAGAGCACCAGTGGATCAATCCAAAGACCCCAAATCCTGTGCTGCAGTTAGAAAAGaaaacaCTAAAGAAGCGAGAAAGctcACTGCTG
>TCONS_00003076
TCTGATTTTGAAGTAGGAGCCGTGATTGGAGAAGGAGCTTTTGGCCAGGTGTTTGTGGCATCTCACAAACTTCGTAAAAGTGAAAAGGTTGCCCTGAAGTTTATCAACAAGAATGAAGACGACCGTTATCTTGACATTGTAAatgGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAAGTTGATGAATGCTCCGCAATGTCCAAACATCATCGGATTACACGACTGGGTTGAGTATGAGAACAACTTCATTCTCAGTCTGGAGTACGCAGAGTCATGCCAGACCTTGGATCAGTACATCAACGATACAGTGGACGTTGGTGAAAAGCGAGCACGCCAGTTAATGTGTCAGTTGATCCAAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGAGATATCCACACGGAGAACATCCTGGTGACTCAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCGATGATTATCGAGGAGCTATTATATGCACGCCACCTGAGATTTTCATGGGCCCCATATTCCATGCTGACCCAGTAAACGTCTGGACAATTGGCATCGTGCTGTATGAAATATTGCATGCAGATTTGCCCTTTGATGACGAAGATTCAATAATGTTTCAATCCGCTGAGATACGCCCCAGGTTATCTACAGAATGCCAGGACATGATTTCCCAGTGTTTCATCCGTAATCCAGTTAACCGGCTAAAGTTACATGAGGTAGAAGAGCACCAGTGGATC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094127

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000534 False 2821 lncRNA 0.45 11 26577288 26584593
TCONS_00002840 False 894 lncRNA 0.43 7 26577487 26583067
TCONS_00002841 False 927 lncRNA 0.45 8 26580088 26583460
TCONS_00003076 True 786 lncRNA 0.45 5 26580184 26583067

Neighbor

gene id symbol gene type direction distance location
XLOC_000322 AL954695.2 coding upstream 22449 26551034 ~ 26554839 (+)
XLOC_000321 uso1 coding upstream 67972 26467071 ~ 26509316 (+)
XLOC_000320 g3bp2 coding upstream 111286 26444986 ~ 26466002 (+)
XLOC_000319 arhgef38 coding upstream 139468 26411496 ~ 26437820 (+)
XLOC_000318 tet2 coding upstream 175242 26356205 ~ 26402046 (+)
XLOC_000324 coro2a coding downstream 20472 26605065 ~ 26654311 (+)
XLOC_000325 NA coding downstream 80096 26664689 ~ 26671210 (+)
XLOC_000326 si:dkey-25o16.4 coding downstream 92165 26676758 ~ 26700439 (+)
XLOC_000327 NA coding downstream 155522 26740115 ~ 26741149 (+)
XLOC_000328 bnc2 coding downstream 439094 27023687 ~ 27212459 (+)
XLOC_000308 NA non-coding upstream 855586 25719653 ~ 25721702 (+)
XLOC_000305 NA non-coding upstream 1023989 25550053 ~ 25553299 (+)
XLOC_000304 NA non-coding upstream 1134587 25440037 ~ 25442701 (+)
XLOC_000301 BX005016.1 non-coding upstream 1457083 25120089 ~ 25120205 (+)
XLOC_000335 NA non-coding downstream 1887606 28472199 ~ 28473413 (+)
XLOC_000336 CU469541.1 non-coding downstream 2319177 28903770 ~ 28904635 (+)
XLOC_000340 BX908780.5 non-coding downstream 2589602 29174195 ~ 29180648 (+)

Expression


Co-expression Network