XLOC_000324 (coro2a)


Basic Information

Item Value
gene id XLOC_000324
gene name coro2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26605065 ~ 26654311 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000535
TCGTTTGTGTCCCATAGTGAAGTGAAACAGATGCCAGCCGATGCTCACAGCTCACCTCAAACACTGCGGCATCTGTGTTCCGCTCATCCCATAATCTctacctctctctctctgacacatTTCTGCGAGAGAGTGTTTAAAAAGACGCGGATTTAGTGGCCGTGGCTTGTACTCTCAGGTCTCTTCATACTGCATGACCATCACAAAGATGACATGGCGTCCTCAGTACCGGAGTTCTAAGTATCGCCATGTGTTTGGGAAGCCGGCCACAAAAGAGAACTGCTATGATGGCGTCCCCATCACTCGAAGTGTTCATGACAACCAACTCTGTGCCGCTAATCCACGCTTTATCGCTGTCATCACTGAATGTGCAGGAGGTGGATCTTTCCTGGTGCTGCCCGTCCATCATACTGGCAAGGTTGACCCTCATCATCCAAAGGTTTCTGGTCACAGAGGGAATGTACTTGACATCAAATGGAATCACTTTAATGACTTCTGCATAGCATCTTGTTCAGAGGACGCCACAGTGAAAATCTGGGAAATCCCTGAACATGGTGTTTTGAAGACCATCACAGTGCCTTGGAAAGAGCTGCAGGGTCATTCTCGACGTGTAGGCCTCATTGAGTGGCATCCCACTGCCAACAACATCATTTTCAGCACCGGCTATGACTATCAGGTTATGGTGTGGAAGCTGGATGTTCCTGAACAGGTGATTAAGAACCCTGTGCGCTCCATCAGTGTTCATTCAGATGTGGTTCTGTCCATGTCCTTCAACACAGATGGCAGCAAACTTGCTACTTCCTGCAAGGACAAGAAAATCCGGGTGATTGACCCACGTACTGGCACCATTTTACAGGAGACTAACTGCAAATCACACAAAGCCAGTAAAGTGCTATTTCTTGGAAATTTGAAAATGCTCCTCTCCACGGGAAACTCACGCTGGAACCATCGCCAGATTGCACTTTGGGATCAAGAGGATCTCTCTCAGCCATCTTATTCTGAGGATTTAGACGGCTCTTCTGGTGTTCTCTTCCCTTTTTATGACCCGGACACACACATGCTTTACATAGCTGGAAAAGGTGATGGAAATATCAGATACTATGAAATCAGTCCAGAGAAGCCATATGTGCACTATTTGACTGAATACAGGTCTCATCTACCACAGAAGGGAATGGGTGTCATGCCAAAGAGAGGACTTGATGTGTGTTCCTGTGAAATCTTCAGATTCTACAAGCTAGTGACAATCAAAAGTCTCATAGAACCTCTCTCCATGATCGTTCCACGAAGGTCAGAGTCCTATCAAGAGGACATTTACCCCATGACAGCTGGAAACAAGCCCGCCATGACAGCAAATGAGTGGATCAGTGGTCTAGACAAAGGTCCTGTGATGATGTCACTGAGGCCTGGAAGTAAAGTGGACACATATGTGGAGTTGGGTTTGAAGAAAAGCCCAATGGAATCAACAGAGATGCACAATTCTCGCAGTCAGCCTGGGTTGTCACAGCTCATTCAGCGACTAGAGACCAAAGATGGAAACGGACGCAAAGAATCCCACCCTACATTATTACTCCCATCCACTGAAGAAAACGGCAGTTCTGCAAGCCATGTCAGCAATGGACAGCTAGATTCCCCACACTGCTCACCACCAAAAACGGAGAATGAGCTACGGCAGATGTTTTATAAGCAGCAGGAGGAGATCCGAAAAATGAGGGAGTTGCTGAATCAGAAGGATGTCCGGATAAAACAGCTAGAACTGGAGATCAAAAATGTGAGGAACTCACAAGCTCCTCTTTGAGAGATACTGTAGTACAGCATCACACTGTAAACGCCTTGTCTGCTTCACTAACATTGACTTAAGAACTTTCTGCCTCGGGAATTTTGCTGTAAAGATGCGGTCACTGATGCTTGGCAAAGTTGTTAACAAGGATCCATGCGATTGGGAGTGAAGAAGTTTACATTGCAGATTACACTTGTTGTTTTGTTTCAAGCTGCCCAACAGAAAAGCTGCTTGACTACAATATTGACAATGGACCTTCTAGCCTGTGAAATTTTGCGCAAATTTGGAAAATGTGACCGCACCTTAGGGAAACATGTGGGCTACATTCCCATTTCTAACATCTCCTCATGGAAAGTCATTCCTTGTATGCACATTTTGTGCACATAAATACTGTACAACCTCtgtggaagtttttttttaaacttaagcactatgcaaacatttttattttcagttgtgatcttactttttaatgtatttttgtttgtttgttttaaaaaatggccTAAATGATATGTTTATGTTTTAGAAATGAGGTTATTTGAGTTTATTCTTGAATATGATTGTAACACGAGAATGTTCTTTTcaattcattttctatttaaattctGTGAATCAAAAGATTTTGATAACAATAATGCACCTGAGACCTAATTGGAAATATAAATTGTAACTAAGCCTCAagttaaagatttttttgttCGGTGTCCAAATGTGGTTAAAAGAGTTTACGAAATCCTAGCATGCACTGGTGAGGCACTATGGCTGGGATCCCACAATGTCAAGTAATGTAACCAAACTGTGAACTGCCAAACTCATCAAAATGCATGAATCTACTACCGTATTACAATGGtttcaaaacatttaagtttGGCCAGTTTAAAACCTTCTCCTAATTGGAGCTCTTGGTTCACAAATTAAGAAAAGCcatatttttttagaaatgattttaataatgttttgtttacatgAGGACCTGTACGTGCACACATCAGAATATAGAGTAAGATGTTTAATATGCTATTTTAAGTGTTGTTGCtaaaatatttgcttatttactAAATGTTGTTCAAACAC
>TCONS_00000536
GATTTAGTGGCCGTGGCTTGTACTCTCAGGTCTCTTCATACTGCATGACCATCACAAAGATGACATGGCGTCCTCAGTACCGGAGTTCTAAGTATCGCCATGTGTTTGGGAAGCCGGCCACAAAAGAGAACTGCTATGATGGCGTCCCCATCACTCGAAGTGTTCATGACAACCAACTCTGTGCCGCTAATCCACGCTTTATCGCTGTCATCACTGAATGTGCAGGAGGTGGATCTTTCCTGGTGCTGCCCGTCCATCATGTAAGTAAAGCAGTGATTATAatcttggtcccactttatattaggtggcctcaTTTACTGTGcactttaatcaaaaatacagttaaaaacagtgtatttactgtgtttataatataTTGCAGAAcatgctcttgaggtgggatacgggTAGTGTTAGAGACAAGTTTGgaggcatgggtaggtttaaaaGTGGGATAAGGTGTAGGGGATGCAGAAATTacttacagatgtaattacatgcatgtatttaatcaatcatgaTTACAGTGTAGAAACATACACAATAAtgcattgtaacaaattattaatgtATGTGGTCATTTGATGTCGTGTTAATACACGTTTCAACATTTCAGCTCCCTTACTCAGAAACAATGCCAGCAGTTAGTAGTTTAGATACGTATGAATGATGACAAAATTGCATTTCACTTGTAACTGAGTCATTTATGTTACGTAattgtttttttgggatgttcTCTTTGTTGAGACTTGTGTCTTTAACAAAGACATTTCTGTGTGATGATGCTTGGTCAAACTTGTAATAACTTAGTACTgagttttactgtaaaatataatccCCTTTTAAGGTGCTATAGAATGCATTGATACGTTATGTTTGAATTGTTCTCTGTTATCTAGAATGTTTGTGGCTTG
>TCONS_00000537
ATGATCTCTTACCTGCTTCGCTCACACACACTGGACGCCGCTGGCTTTCTGTCCACGTTTACTAAAGCTGCAGGGCACAAGTTTGACATCTGCTTTTCTCTCTTCTTTGTGTTGGTTGTCTGGCTTCTTTCTCGCTTTGATTTTTGCAATGTTCTACAAAAGCTGAAATGGATTTGTAACCGGTGGAAGTGGCAAACGgatatttttttccacttttattTTGTCATCTACAGTTCTCTGTTCTGTCAGGTCTCCGTGTGCTCAGACAGGATGACATGGCGTCCTCAGTACCGGAGTTCTAAGTATCGCCATGTGTTTGGGAAGCCGGCCACAAAAGAGAACTGCTATGATGGCGTCCCCATCACTCGAAGTGTTCATGACAACCAACTCTGTGCCGCTAATCCACGCTTTATCGCTGTCATCACTGAATGTGCAGGAGGTGGATCTTTCCTGGTGCTGCCCGTCCATCATACTGGCAAGGTTGACCCTCATCATCCAAAGGTTTCTGGTCACAGAGGGAATGTACTTGACATCAAATGGAATCACTTTAATGACTTCTGCATAGCATCTTGTTCAGAGGACGCCACAGTGAAAATCTGGGAAATCCCTGAACATGGTGTTTTGAAGACCATCACAGTGCCTTGGAAAGAGCTGCAGGGTCATTCTCGACGTGTAGGCCTCATTGAGTGGCATCCCACTGCCAACAACATCATTTTCAGCACCGGCTATGACTATCAGGTTATGGTGTGGAAGCTGGATGTTCCTGAACAGGTGATTAAGAACCCTGTGCGCTCCATCAGTGTTCATTCAGATGTGGTTCTGTCCATGTCCTTCAACACAGATGGCAGCAAACTTGCTACTTCCTGCAAGGACAAGAAAATCCGGGTGATTGACCCACGTACTGGCACCATTTTACAGGAGACTAACTGCAAATCACACAAAGCCAGTAAAGTGCTATTTCTTGGAAATTTGAAAATGCTCCTCTCCACGGGAAACTCACGCTGGAACCATCGCCAGATTGCACTTTGGGATCAAGAGGATCTCTCTCAGCCATCTTATTCTGAGGATTTAGACGGCTCTTCTGGTGTTCTCTTCCCTTTTTATGACCCGGACACACACATGCTTTACATAGCTGGAAAAGGTGATGGAAATATCAGATACTATGAAATCAGTCCAGAGAAGCCATATGTGCACTATTTGACTGAATACAGGTCTCATCTACCACAGAAGGGAATGGGTGTCATGCCAAAGAGAGGACTTGATGTGTGTTCCTGTGAAATCTTCAGATTCTACAAGCTAGTGACAATCAAAAGTCTCATAGAACCTCTCTCCATGATCGTTCCACGAAGGTCAGAGTCCTATCAAGAGGACATTTACCCCATGACAGCTGGAAACAAGCCCGCCATGACAGCAAATGAGTGGATCAGTGGTCTAGACAAAGGTCCTGTGATGATGTCACTGAGGCCTGGAAGTAAAGTGGACACATATGTGGAGTTGGGTTTGAAGAAAAGCCCAATGGAATCAACAGAGATGCACAATTCTCGCAGTCAGCCTGGGTTGTCACAGCTCATTCAGCGACTAGAGACCAAAGATGGAAACGGACGCAAAGAATCCCACCCTACATTATTACTCCCATCCACTGAAGAAAACGGCAGTTCTGCAAGCCATGTCAGCAATGGACAGCTAGATTCCCCACACTGCTCACCACCAAAAACGGAGAATGAGCTACGGCAGATGTTTTATAAGCAGCAGGAGGAGATCCGAAAAATGAGGGAGTTGCTGAATCAGAAGGATGTCCGGATAAAACAGCTAGAACTGGAGATCAAAAATGTGAGGAACTCACAAGCTCCTCTTTGA
>TCONS_00000538
CGCCGCTGGCTTTCTGTCCACGTTTACTAAAGCTGCAGGGCACAAGTTTGACATCTGCTTTTCTCTCTTCTTTGTGTTGGTTGTCTGGCTTCTTTCTCGCTTTGATTTTTGCAATGTTCTACAAAAGCTGAAATGGATTTGTAACCGGTGGAAGTGGCAAACGgatatttttttccacttttattTTGTCATCTACAGTTCTCTGTTCTGTCAGGTCTCCGTGTGCTCAGACAGGATGACATGGCGTCCTCAGTACCGGAGTTCTAAGTATCGCCATGTGTTTGGGAAGCCGGCCACAAAAGAGAACTGCTATGATGGCGTCCCCATCACTCGAAGTGTTCATGACAACCAACTCTGTGCCGCTAATCCACGCTTTATCGCTGTCATCACTGAATGTGCAGGAGGTGGATCTTTCCTGGTGCTGCCCGTCCATCATACTGGCAAGGTTGACCCTCATCATCCAAAGGTTTCTGGTCACAGAGGGAATGTACTTGACATCAAATGGAATCACTTTAATGACTTCTGCATAGCATCTTGTTCAGAGGACGCCACAGTGAAAATCTGGGAAATCCCTGAACATGGTGTTTTGAAGACCATCACAGTGCCTTGGAAAGAGCTGCAGGGTCATTCTCGACGTGTAGGCCTCATTGAGTGGCATCCCACTGCCAACAACATCATTTTCAGCACCGGCTATGACTATCAGGTTATGGTGTGGAAGCTGGATG
>TCONS_00000539
TCACTATAGATGACATGGCGTCCTCAGTACCGGAGTTCTAAGTATCGCCATGTGTTTGGGAAGCCGGCCACAAAAGAGAACTGCTATGATGGCGTCCCCATCACTCGAAGTGTTCATGACAACCAACTCTGTGCCGCTAATCCACGCTTTATCGCTGTCATCACTGAATGTGCAGGAGGTGGATCTTTCCTGGTGCTGCCCGTCCATCATACTGGCAAGGTTGACCCTCATCATCCAAAGGTTTCTGGTCACAGAGGGAATGTACTTGACATCAAATGGAATCACTTTAATGACTTCTGCATAGCATCTTGTTCAGAGGACGCCACAGTGAAAATCTGGGAAATCCCTGAACATGGTGTTTTGAAGACCATCACAGTGCCTTGGAAAGAGCTGCAGGGTCATTCTCGACGTGTAGGCCTCATTGAGTGGCATCCCACTGCCAACAACATCATTTTCAGCACCGGCTATGACTATCAGGTTATGGTGTGGAAGCTGGATGTTCCTGAACAGGTGATTAAGAACCCTGTGCGCTCCATCAGTGTTCATTCAGATGTGGTTCTGTCCATGTCCTTCAACACAGATGGCAGCAAACTTGCTACTTCCTGCAAGGACAAGAAAATCCGGGTGATTGACCCACGTACTGGCACCATTTTACAGGAGACTAACTGCAAATCACACAAAGCCAGTAAAGTGCTATTTCTTGGAAATTTGAAAATGCTCCTCTCCACGGGAAACTCACGCTGGAACCATCGCCAGATTGCACTTTGGGATCAAGAGGATCTCTCTCAGCCATCTTATTCTGAGGATTTAGACGGCTCTTCTGGTGTTCTCTTCCCTTTTTATGACCCGGACACACACATGCTTTACATAGCTGGAAAAGGTGATGGAAATATCAGATACTATGAAATCAGTCCAGAGAAGCCATATGTGCACTATTTGACTGAATACAGGTCTCATCTACCACAGAAGGGAATGGGTGTCATGCCAAAGAGAGGACTTGATGTGTGTTCCTGTGAAATCTTCAGATTCTACAAGCTAGTGACAATCAAAAGTCTCATAGAACCTCTCTCCATGATCGTTCCACGAAGGTCAGAGTCCTATCAAGAGGACATTTACCCCATGACAGCTGGAAACAAGCCCGCCATGACAGCAAATGAGTGGATCAGTGGTCTAGACAAAGGTCCTGTGATGATGTCACTGAGGCCTGGAAGTAAAGTGGACACATATGTGGAGTTGGGTTTGAAGAAAAGCCCAATGGAATCAACAGAGATGCACAATTCTCGCAGTCAGCCTGGGTTGTCACAGCTCATTCAGCGACTAGAGACCAAAGATGGAAACGGACGCAAAGAATCCCACCCTACATTATTACTCCCATCCACTGAAGAAAACGGCAGTTCTGCAAGCCATGTCAGCAATGGACAGCTAGATTCCCCACACTGCTCACCACCAAAAACGGAGAATGAGCTACGGCAGATGTTTTATAAGCAGCAGGAGGAGATCCGAAAAATGAGGGAGTTGCTGAATCAGAAGGATGTCCGGATAAAACAGCTAGAACTGGAGATCAAAAATGTGAGGAACTCACAAGCTCCTCTTTGAGAGATACTGTAGTACAGCATCACACTGTAAACGCCTTGTCTGCTTCACTAACATTGACTTAAGAACTTTCTGCCTCGGGAATTTTGCTGTAAAGATGCGGTCACTGATGCTTGGCAAAGTTGTTAACAAGGATCCATGCGATTGGGAGTGAAGAAGTTTACATTGCAGATTACACTTGTTGTTTTGTTTCAAGCTGCCCAACAGAAAAGCTGCTTGACTACAATATTGACAATGGACCTTCTAGCCTGTGAAATTTTGCGCAAATTTGGAAAATGTGACCGCACCTTAGGGAAACATGTGGGCTACATTCCCATTTCTAACATCTCCTCATGGAAAGTCATTCCTTGTATGCACATTTTGTGCACATAAATACTGTACAACCTCtgtggaagtttttttttaaacttaagcactatgcaaacatttttattttcagttgtgatcttactttttaatgtatttttgtttgtttgttttaaaaaatggccTAAATGATATGTTTATGTTTTAGAAATGAGGTTATTTGAGTTTATTCTTGAATATGATTGTAACACGAGAATGTTCTTTTcaattcattttctatttaaattctGTGAATCAAAAGATTTTGATAACAATAATGCACCTGAGACCTAATTGGAAATATAAATTGTAACTAAGCCTCAagttaaagatttttttgttCGGTGTCCAAATGTGGTTAAAAGAGTTTACGAAATCCTAGCATGCACTGGTGAGGCACTATGGCTGGGATCCCACAATGTCAAGTAATGTAACCAAACTGTGAACTGCCAAACTCATCAAAATGCATGAATCTACTACCGTATTACAATGGtttcaaaacatttaagtttGGCCAGTTTAAAACCTTCTCCTAATTGGAGCTCTTGGTTCACAAATTAAGAAAAGCcatatttttttagaaatgattttaataatgttttgtttacatgAGGACCTGTACGTGCACACATCAGAATATAGAGTAAGATGTTTAATATGCTATTTTAAGTGTTGTTGCtaaaatatttgcttatttactAAATGTTGTTCAAAC
>TCONS_00000540
ACAATAGGGATCATTTTCTAGTCAGAACATGTCTTTGAATGTCTTCCAGGTGTCATGCCAAAGAGAGGACTTGATGTGTGTTCCTGTGAAATCTTCAGATTCTACAAGCTAGTGACAATCAAAAGTCTCATAGAACCTCTCTCCATGATCGTTCCACGAAGGTCAGAGTCCTATCAAGAGGACATTTACCCCATGACAGCTGGAAACAAGCCCGCCATGACAGCAAATGAGTGGATCAGTGGTCTAGACAAAGGTCCTGTGATGATGTCACTGAGGCCTGGAAGTAAAGTGGACACATATGTGGAGTTGGGTTTGAAGAAAAGCCCAATGGAATCAACAGAGATGCACAATTCTCGCAGTCAGCCTGGGTTGTCACAGCTCATTCAGCGACTAGAGACCAAAGATGGAAACGGACGCAAAGAATCCCACCCTACATTATTACTCCCATCCACTGAAGAAAACGGCAGTTCTGCAAGCCATGTCAGCAATGGACAGCTAGATTCCCCAC

Function

symbol description
coro2a Predicted to enable actin filament binding activity. Predicted to be involved in intracellular signal transduction. Part of transcription repressor complex.

GO:

id name namespace
GO:0017053 transcription repressor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2258 Predicted to enable actin filament binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of transcription repressor complex. Is expressed in several structures, including apical ectodermal ridge pectoral fin bud; ectoderm; endoderm; neural plate; and presumptive ectoderm. Orthologous to human CORO2A (coronin 2A).

Ensembl:

ensembl_id ENSDARG00000005210

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000535 False 2854 mRNA 0.42 12 26605065 26654311
TCONS_00000536 False 914 lncRNA 0.38 2 26605214 26627687
TCONS_00000537 False 1857 mRNA 0.46 12 26622214 26653252
TCONS_00000538 False 725 mRNA 0.47 5 26622249 26640898
TCONS_00000539 False 2653 mRNA 0.42 11 26626824 26654309
TCONS_00000540 True 508 lncRNA 0.46 3 26649027 26651227

Neighbor

gene id symbol gene type direction distance location
XLOC_000323 AL954695.3 coding upstream 20472 26577288 ~ 26584593 (+)
XLOC_000322 AL954695.2 coding upstream 50226 26551034 ~ 26554839 (+)
XLOC_000321 uso1 coding upstream 95749 26467071 ~ 26509316 (+)
XLOC_000320 g3bp2 coding upstream 139063 26444986 ~ 26466002 (+)
XLOC_000319 arhgef38 coding upstream 167245 26411496 ~ 26437820 (+)
XLOC_000325 NA coding downstream 10378 26664689 ~ 26671210 (+)
XLOC_000326 si:dkey-25o16.4 coding downstream 22447 26676758 ~ 26700439 (+)
XLOC_000327 NA coding downstream 85804 26740115 ~ 26741149 (+)
XLOC_000328 bnc2 coding downstream 369376 27023687 ~ 27212459 (+)
XLOC_000329 si:dkey-29d5.1 coding downstream 1059038 27713349 ~ 27733179 (+)
XLOC_000308 NA non-coding upstream 883363 25719653 ~ 25721702 (+)
XLOC_000305 NA non-coding upstream 1051766 25550053 ~ 25553299 (+)
XLOC_000304 NA non-coding upstream 1162364 25440037 ~ 25442701 (+)
XLOC_000335 NA non-coding downstream 1817888 28472199 ~ 28473413 (+)
XLOC_000336 CU469541.1 non-coding downstream 2249459 28903770 ~ 28904635 (+)
XLOC_000340 BX908780.5 non-coding downstream 2519884 29174195 ~ 29180648 (+)

Expression


Co-expression Network