XLOC_000308


Basic Information

Item Value
gene id XLOC_000308
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25719653 ~ 25721702 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003074
ATGATCGCTCTCAGACTGCTGAACTGGTTCTTCATCACCTCAACAATAGAGGAAGAATATGAAGAAGACAGAAGGAAGAAAACATATGATGTTTCCCTTTACAAACGTGGTGATCTTTTGATTGTATCCAGGactctttttaaacattttggaaTCTATTTAGGTGAGGGTCGTGTTGCTCATTTTATCCCAGACATCCTGCCAGCGTTCACTACAGAGAAGGCTGTTGTTGAGAAAATGGTGACCAACGAAAGGTTGATTTTGGGGGTCTTGGCAAAGGCCAGTGTCCGTGTGGACTCTTTGGCAGATTTTGCATATGGCGCTGATATTGAGGTCAATTGTACTGATGGTATGGTCAGTGTGCCGCCACTGAATGGAGAGGAAGTGGCTCAGCGTGCAGAGAAGCTGATTGGATCATTTTCCTACAGTTTACTCTGGCATAACTGTGAACACTATGTCATGTATTGCCGCTATGGTGTTGAATACAGCTTCCAAACCTACCAGTTCTGCAAAGCTGTAAGGACAGCTCTCCTCAACAGGATGACGGCCATGCTGTCAGCTGTAATCGGGTTCTGCATCATTGTGTATTTAGGCGCTATAACACCTCTCAGCATCCTTCCTGTTGTCATCATTCCTTTTACCATCTGGATGGCATCTTGAAGACACTCCGGGTGCAATTTGTCCTTTATCTTTGAGGCAGAAATAGCCACAAAAACATTAAACCATTTACTCAACAGTTATTTTAGAAATATGCAGAATTCTAACTGAAACACTTTATTTAAGGGTGTtcttgttacagtgtaactattaATTTAACTGTCAATTAATATTGTGCATAATTAGTTTCATGTATAGTTAAGTGGCTTAGGCTTAGGTAAAGTTGCATGTAATTTTGCATAACA
>TCONS_00000503
ATGATCGCTCTCAGACTGCTGAACTGGTTCTTCATCACCTCAACAATAGAGGAAGAATATGAAGAAGACAGAAGGAAGAAAACATATGATGTTTCCCTTTACAAACGTGGTGATCTTTTGATTGTATCCAGGactctttttaaacattttggaaTCTATTTAGGTGAGGGTCGTGTTGCTCATTTTATCCCAGACATCCTGCCAGCGTTCACTACAGAGAAGGCTGTTGTTGAGAAAATGGTGACCAACGAAAGGTTGATTTTGGGGGTCTTGGCAAAGTCTTGGCCAGTGTCCGTGTGGACTCTTTGGCAGATTTTGCATATGGCGCTGATATTGAGGTCAATTGTACTGATGGTATGGTCAGTGTGCCGCCACTGAATGGAGAGGAAGTGGCTCAGCGTGCAGAGAAGCTGATTGGATCATTTTCCTACAGTTTACTCTGGCATAACTGTGAACACTATGTCATGTATTGCCGCTATGGTGTTGAATACAGCTTCCAAACCTACCAGTTCTGCAAAGCTGTAAGGACAGCTCTCCTCAACAGGATGACGGCCATGCTGTCAGCTGTAATCGGGTTCTGCATCATTGTGTATTTAGGCGCTATAACACCTCTCAGCATCCTTCCTGTTGTCATCATTCCTTTTACCATCTGGATGGCATCTTGAAGACACTCCGGGTGCAATTTGTCCTTTATCTTTGAGGCAGAAATAGCCACAAAAACATTAAACCATTTACTCAACAGTTATTTTAGAAATATGCAGAATTCTAACTGAAACACTTTATTTAAGGGTGTtcttgttacagtgtaactattaATTTAACTGTCAATTAATATTGTGCATAATTAGTTTCATGTATAGTTAAGTGGCTTAGGCTTAGGTAAAGTTGCATGTAATTTTGCATAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003074 False 902 lncRNA 0.41 3 25719653 25721702
TCONS_00000503 True 907 lncRNA 0.41 2 25719653 25721702

Neighbor

gene id symbol gene type direction distance location
XLOC_000307 lrata coding upstream 21614 25696798 ~ 25698039 (+)
XLOC_000306 plrg1 coding upstream 53049 25650917 ~ 25666604 (+)
XLOC_000305 NA coding upstream 166354 25550053 ~ 25553299 (+)
XLOC_000304 NA coding upstream 276952 25440037 ~ 25442701 (+)
XLOC_000303 tmem131l coding upstream 403504 25218177 ~ 25316149 (+)
XLOC_000309 npy2r coding downstream 11013 25732715 ~ 25733867 (+)
XLOC_000310 gucy1a1 coding downstream 62099 25783801 ~ 25799051 (+)
XLOC_000311 gucy1b1 coding downstream 79946 25801648 ~ 25841659 (+)
XLOC_000312 fabp2 coding downstream 126529 25848231 ~ 25851575 (+)
XLOC_000313 BX323448.1 coding downstream 290966 26012668 ~ 26045715 (+)
XLOC_000301 BX005016.1 non-coding upstream 599448 25120089 ~ 25120205 (+)
XLOC_000300 NA non-coding upstream 1119665 24596326 ~ 24599988 (+)
XLOC_000297 NA non-coding upstream 1256348 24462460 ~ 24463305 (+)
XLOC_000322 AL954695.2 non-coding downstream 829332 26551034 ~ 26554839 (+)
XLOC_000323 AL954695.3 non-coding downstream 855586 26577288 ~ 26584593 (+)
XLOC_000325 NA non-coding downstream 942987 26664689 ~ 26671210 (+)
XLOC_000327 NA non-coding downstream 1018413 26740115 ~ 26741149 (+)
XLOC_000335 NA non-coding downstream 2750497 28472199 ~ 28473413 (+)

Expression


Co-expression Network