RNA id: TCONS_00000503


Basic Information

Item Value
RNA id TCONS_00000503
length 907
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_000308
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25719653 ~ 25721702 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATCGCTCTCAGACTGCTGAACTGGTTCTTCATCACCTCAACAATAGAGGAAGAATATGAAGAAGACAGAAGGAAGAAAACATATGATGTTTCCCTTTACAAACGTGGTGATCTTTTGATTGTATCCAGGactctttttaaacattttggaaTCTATTTAGGTGAGGGTCGTGTTGCTCATTTTATCCCAGACATCCTGCCAGCGTTCACTACAGAGAAGGCTGTTGTTGAGAAAATGGTGACCAACGAAAGGTTGATTTTGGGGGTCTTGGCAAAGTCTTGGCCAGTGTCCGTGTGGACTCTTTGGCAGATTTTGCATATGGCGCTGATATTGAGGTCAATTGTACTGATGGTATGGTCAGTGTGCCGCCACTGAATGGAGAGGAAGTGGCTCAGCGTGCAGAGAAGCTGATTGGATCATTTTCCTACAGTTTACTCTGGCATAACTGTGAACACTATGTCATGTATTGCCGCTATGGTGTTGAATACAGCTTCCAAACCTACCAGTTCTGCAAAGCTGTAAGGACAGCTCTCCTCAACAGGATGACGGCCATGCTGTCAGCTGTAATCGGGTTCTGCATCATTGTGTATTTAGGCGCTATAACACCTCTCAGCATCCTTCCTGTTGTCATCATTCCTTTTACCATCTGGATGGCATCTTGAAGACACTCCGGGTGCAATTTGTCCTTTATCTTTGAGGCAGAAATAGCCACAAAAACATTAAACCATTTACTCAACAGTTATTTTAGAAATATGCAGAATTCTAACTGAAACACTTTATTTAAGGGTGTtcttgttacagtgtaactattaATTTAACTGTCAATTAATATTGTGCATAATTAGTTTCATGTATAGTTAAGTGGCTTAGGCTTAGGTAAAGTTGCATGTAATTTTGCATAACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002836 lncRNA upstream 166354 25550612 ~ 25553299 (+) False XLOC_000305
TCONS_00002838 lncRNA upstream 166354 25551151 ~ 25553299 (+) False XLOC_000305
TCONS_00002837 lncRNA upstream 166354 25551151 ~ 25553299 (+) True XLOC_000305
TCONS_00003073 lncRNA upstream 166508 25550053 ~ 25553145 (+) False XLOC_000305
TCONS_00003072 lncRNA upstream 276952 25440037 ~ 25442701 (+) True XLOC_000304
TCONS_00000505 lncRNA downstream 62099 25783801 ~ 25792713 (+) False XLOC_000310
TCONS_00000508 lncRNA downstream 82940 25804642 ~ 25812959 (+) True XLOC_000311
TCONS_00000510 lncRNA downstream 126913 25848615 ~ 25849235 (+) True XLOC_000312
TCONS_00000514 lncRNA downstream 377591 26099293 ~ 26101025 (+) True XLOC_000315
TCONS_00000525 lncRNA downstream 745369 26467071 ~ 26473854 (+) False XLOC_000321
TCONS_00000502 mRNA upstream 21614 25696798 ~ 25698039 (+) True XLOC_000307
TCONS_00000501 mRNA upstream 53049 25650917 ~ 25666604 (+) True XLOC_000306
TCONS_00000498 mRNA upstream 403504 25218177 ~ 25316149 (+) False XLOC_000303
TCONS_00000497 mRNA upstream 503418 25178112 ~ 25216235 (+) True XLOC_000302
TCONS_00000496 mRNA upstream 504889 25178106 ~ 25214764 (+) False XLOC_000302
TCONS_00000504 mRNA downstream 11013 25732715 ~ 25733867 (+) True XLOC_000309
TCONS_00000506 mRNA downstream 62099 25783801 ~ 25799051 (+) True XLOC_000310
TCONS_00000507 mRNA downstream 79946 25801648 ~ 25841659 (+) False XLOC_000311
TCONS_00000509 mRNA downstream 126529 25848231 ~ 25851575 (+) False XLOC_000312
TCONS_00000511 mRNA downstream 290966 26012668 ~ 26045715 (+) True XLOC_000313
TCONS_00000495 other upstream 599448 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 1334956 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 1605095 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 1852688 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 1968440 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000518 other downstream 389683 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 1991647 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 2255668 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 2262691 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 3346960 29068662 ~ 29080336 (+) False XLOC_000337