XLOC_000302 (mnd1)


Basic Information

Item Value
gene id XLOC_000302
gene name mnd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25178106 ~ 25216235 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000496
ACATGCGCAGTGAGATTGTCTTTTTAGCTCTCGCGCCAAACTCAAGCAGTCAAACATGTCTAAAAAGAAAGGACTTAGCTTGGAAGAAAAAAGAAGTCGCATGATGGAAATATTTTTTGAAACTAAAGATGTGTTTCAGCTGAAGGACATAGAGAAAATTGCCCCAAAATCCAAAGGAATCActccCATGTCAGTGAAAGAGGTATTGCAGAGTCTGGTGGATGATAACATGGTGGACACTGAGAGGGTGGGCACCTCCAACTATTACTGGGCGTTTCCTAGTAAAGCACTGCATGCCCGAAAACGCAGGTTAGAGGAACTGGAGAAACAAcTTGAGGATGGCAGTCAGCGTAAAAAAGCCCTTCAGCAAGCAGTTGACAAAGCCAAAGTGGGACGTGAAGTCAATGAGGAGAGAGAGGATCTCTTAAAGGAGCTCACAGCATTGAAAGGTCAGCGAGATCAGATGAAGGTCGAAATAGAGAAGTACCAAGAATGTGATCCAGCGGTGGTGGAGGAAATTCGTAATGCCAACATTGCAGCTAAAGAGGCTGTGGCTAGGTGGACGGGGGGAACTTTTgggaactacctgatctcatacctccttacatgctcattgaccaggcaggagccctgggctcatcatttatctccaagctcagggttctctcctgggacagcatgccaaacctgctattattatcagcAAGCAATATCCTAGTCTAAACTcaatatactaattaaaataattagttaagaaatcttcaataatattaatgatatgacgtagttctggAAACTTTCTACTTTTCTGGTTATCCGTCTTATTTaacggtcagtttcttttgaccgccccctgtaaTTTTAAAGTATATTACAACGGCAAACGTGTCAAGTCTAAAAGCCTTGTCTGCTGTGTGGCaacaggcgaaagtataaatcatccttgattggctcttagatcaacaTTAAGTAAAAATATCCAGAGCTTATCATAGTCATCGACATGaattttattatgatttgatatgatatcgtttatcggcccaaCACTAGTCTTATATTATGGTGTCATGCGATTTCTTGGTACATGAATGTAAATGTAGGGATTGATGGGCCATtgaattattacaaaatatagCACAGCCAAGGTTGTTGTTGATCCAGCCACAAAACTAacaatgtgttttttgtttttaatatttcaattattCCACTAATGTTACTAGTAGACACCTTCAAAGattgttcagatgttgtatttcaagacACTCAAACTGATAGTGTGTGGGGCTAGTTTTTTAAGCATCTCATCCAaagtgtttgatttgatttttgacaTGTTAGCTGTGAAAGTGTGTGAAGTTAAATTGTAATGTGTTTCCAACTGTAATGTTTAACCATTTTCCCCTGCAAAAactcaatttaataaaaataaaaatatatatataattaataaaaaaa
>TCONS_00000497
GCAGTGAGATTGTCTTTTTAGCTCTCGCGCCAAACTCAAGCAGTCAAACATGTCTAAAAAGAAAGGACTTAGCTTGGAAGAAAAAAGAAGTCGCATGATGGAAATATTTTTTGAAACTAAAGATGTGTTTCAGCTGAAGGACATAGAGAAAATTGCCCCAAAATCCAAAGGAATCActccCATGTCAGTGAAAGAGGTATTGCAGAGTCTGGTGGATGATAACATGGTGGACACTGAGAGGGTGGGCACCTCCAACTATTACTGGGCGTTTCCTAGTAAAGCACTGCATGCCCGAAAACGCAGGTTAGAGGAACTGGAGAAACAAcTTGAGGATGGCAGTCAGCGTAAAAAAGCCCTTCAGCAAGCAGTTGACAAAGCCAAAGTGGGACGTGAAGTCAATGAGGAGAGAGAGGATCTCTTAAAGGAGCTCACAGCATTGAAAGGTCAGCGAGATCAGATGAAGGTCGAAATAGAGAAGTACCAAGAATGTGATCCAGCGGTGGTGGAGGAAATTCGTAATGCCAACATTGCAGCTAAAGAGGCTGTGGCTAGGTGGACGGATAATGTTTTTGCAATCAAATCCTGGGCAAAGAGGAAGTTTGGTTTCGAGAACAGTCGATTGGACAAAGCTTTTGGAATACCAGAGGACTTTGACTACATCAACTAACCAACAATTCACAGCCTGATGGACCTtctgattgtgttcagcactgcACAATCAATAAGCTTTATTCTTTTGCATCAGTTTGTATCAGTTCTGCATGTTCGAGACAAAGCTGTAAACAATTTTACACTGTTGTGCATGGTGTAAATTCTAAGGAGTGCCCCACCCTTGAAATTTTAACCTGGTCTAGTACAAGGCAAACTTCAAGATTGATTTGTCAGCATAAAAGGGTAAACGATGGTGAAAACGCTCCTGGTGTGTAAGTGGAGAAGGTGTTGTGTTAACCCTTGGCTACTCAGAGACGCACTATATGCCCAGACTTACTCTTAGGCCACCTGTTG

Function

symbol description
mnd1 Predicted to enable double-stranded DNA binding activity. Predicted to be involved in reciprocal meiotic recombination. Predicted to act upstream of or within DNA recombination and meiotic cell cycle. Predicted to be active in nucleus. Orthologous to human MND1 (meiotic nuclear divisions 1).

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0005634 nucleus cellular_component
GO:0003690 double-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-116 Predicted to enable double-stranded DNA binding activity. Predicted to be involved in reciprocal meiotic recombination. Predicted to act upstream of or within DNA recombination and meiotic cell cycle. Predicted to be active in nucleus. Orthologous to human MND1 (meiotic nuclear divisions 1).

Ensembl:

ensembl_id ENSDARG00000074451

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000496 False 1461 mRNA 0.39 8 25178106 25214764
TCONS_00000497 True 1005 mRNA 0.44 8 25178112 25216235

Neighbor

gene id symbol gene type direction distance location
XLOC_000301 BX005016.1 coding upstream 57901 25120089 ~ 25120205 (+)
XLOC_000300 NA coding upstream 578118 24596326 ~ 24599988 (+)
XLOC_000299 dctpp1 coding upstream 619357 24557414 ~ 24558749 (+)
XLOC_000298 fam160a1a coding upstream 663433 24469313 ~ 24514673 (+)
XLOC_000297 NA coding upstream 714801 24462460 ~ 24463305 (+)
XLOC_000303 tmem131l coding downstream 1942 25218177 ~ 25316149 (+)
XLOC_000304 NA coding downstream 223802 25440037 ~ 25442701 (+)
XLOC_000305 NA coding downstream 333818 25550053 ~ 25553299 (+)
XLOC_000306 plrg1 coding downstream 434682 25650917 ~ 25666604 (+)
XLOC_000307 lrata coding downstream 480563 25696798 ~ 25698039 (+)
XLOC_000292 NA non-coding upstream 814416 24361993 ~ 24363690 (+)
XLOC_000290 NA non-coding upstream 834372 24336980 ~ 24343734 (+)
XLOC_000308 NA non-coding downstream 503418 25719653 ~ 25721702 (+)
XLOC_000322 AL954695.2 non-coding downstream 1334799 26551034 ~ 26554839 (+)
XLOC_000323 AL954695.3 non-coding downstream 1361053 26577288 ~ 26584593 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_10094312_10098589 NA coding CI01000300 null 10093932 ~ 10098669 (+)