XLOC_000299 (dctpp1)


Basic Information

Item Value
gene id XLOC_000299
gene name dctpp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24557414 ~ 24558749 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000494
ATCCGCGAATACATAACTGAGGGGCAGCTGGTGGCGGGAGATTCACGCATGGTCCTGCACATGAACGATCAGTTTTTGGCACTTCTATATCGTCAGGACTTTTTATTTCAATAACAATGGCACTGCAGCACAACGGCACCGCTTCCAAACTGGCCAAACACAACGGCGAAACTAGCGATCATCACCCCTCTACAAACGGAAAGGAAGAAGCCGAGCACGAACACGCTGATCGGTTCACTTTCACCTCCGAACCAACACTTGAAGACATCCGCCGCATGCAGGCTGAGTTCACGGACGAGAGGAACTGGAACCAGTTTCACCAGCCGCGGAACCTGCTTCTGGCTCTGGTAGGAGAGGTCGGCGAGGTGTCGGAGCTATTCCAGTGGCGTGGGGAGGTGGCGGAGGGTCTACCTGACTGGACCGAACCGGAGCGGGAGCATCTGGCCCAGGAACTCAGCGACGTTTTGATCTATCTGGTTGAACTGGCCGAGAAATGCCACGTTGATTTACCTCGAGCTGTCCTGCGCAAAATGGCATTAAACCGACTCAAGTACCCAGCTAGCAAAGTTCACGGATCAGCTAAGAAATACACTGAATACAAGGACTGATGTGGATGATGTATTTTAGACAAAGACGATCGTTACTGAATAGTTTATAACAGATGGAGCTGATACCGAGTTCCTTAAAACCCCCCTAAAATCACCGTGCTCCTAAAGGTCCTAGTTTTCTTCGTTTAATCTACAGGTGGACACTCTACTCTGTTTTAGGTTGatcttttaaaaatctgaatGCAAGAAACTTGTTTGCACATTTTCCTACTGTAAGCAGCTAAAGTTTTAtagttgttttcttttattttccaaattattttaccaaagctGTTCTGGACAACGTTACTTTGTACTGTGTAGTGTTTTTGCATCACAGTAAAGTGTTTTGCAACACACATGGTCTGTTTGCAGATATTTACTCTGGAAACtggaatgtttttgttattacaGCTAGATACGTTGGCTCTCTAAGTGTTCAGTGTTTTGGATGTGCATGAACCCTTAACAGTATAGCATCTTAATATATGGTCCCTCAAGATGCTTCCTATTCTGGCAGAAGATTTGAACCTGCActcaagtctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaactgcatgTGCGATTATGATCAGGATTGCAGTTAAACTTTATTCTAACAATCTGTCTTTATTGATTAAACTGTTTCCGCAAAGACATGTCATCGGTTATGTGgttggtaataaaaaaaaaacactttaaa

Function

symbol description
dctpp1 Predicted to enable dCTP diphosphatase activity. Predicted to be involved in DNA protection and dCTP catabolic process. Predicted to act upstream of or within nucleoside triphosphate catabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including immature eye; midbrain; neural plate; neural tube; and spinal cord. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to several human genes including DCTPP1 (dCTP pyrophosphatase 1).

GO:

id name namespace
GO:0042262 DNA protection biological_process
GO:0009143 nucleoside triphosphate catabolic process biological_process
GO:0006253 dCTP catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0047429 nucleoside-triphosphate diphosphatase activity molecular_function
GO:0047840 dCTP diphosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism

ZFIN:

id description
ZDB-GENE-040426-1741 Predicted to enable dCTP diphosphatase activity. Predicted to be involved in DNA protection and dCTP catabolic process. Predicted to act upstream of or within nucleoside triphosphate catabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including immature eye; midbrain; neural plate; neural tube; and spinal cord. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to several human genes including DCTPP1 (dCTP pyrophosphatase 1).

Ensembl:

ensembl_id ENSDARG00000054334

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000494 True 1336 mRNA 0.42 1 24557414 24558749

Neighbor

gene id symbol gene type direction distance location
XLOC_000298 fam160a1a coding upstream 42741 24469313 ~ 24514673 (+)
XLOC_000297 NA coding upstream 94109 24462460 ~ 24463305 (+)
XLOC_000296 qdprb2 coding upstream 165741 24387659 ~ 24391673 (+)
XLOC_000295 qdprb2 coding upstream 171435 24382651 ~ 24385979 (+)
XLOC_000294 zgc:171517 coding upstream 176881 24376394 ~ 24380533 (+)
XLOC_000300 NA coding downstream 37577 24596326 ~ 24599988 (+)
XLOC_000301 BX005016.1 coding downstream 561340 25120089 ~ 25120205 (+)
XLOC_000302 mnd1 coding downstream 619357 25178106 ~ 25216235 (+)
XLOC_000303 tmem131l coding downstream 659428 25218177 ~ 25316149 (+)
XLOC_000304 NA coding downstream 881288 25440037 ~ 25442701 (+)
XLOC_000292 NA non-coding upstream 193724 24361993 ~ 24363690 (+)
XLOC_000290 NA non-coding upstream 213680 24336980 ~ 24343734 (+)
XLOC_000289 NA non-coding upstream 413244 24126380 ~ 24144170 (+)
XLOC_000288 NA non-coding upstream 438347 24118367 ~ 24119067 (+)
XLOC_000305 NA non-coding downstream 991304 25550053 ~ 25553299 (+)
XLOC_000308 NA non-coding downstream 1160904 25719653 ~ 25721702 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G414559 NA non-coding CI01000300 null 9766274 ~ 9767204 (-)
rainbow trout (Oncorhynchus mykiss) G420139 NA non-coding NC_048569.1 CM023223.2 58444947 ~ 58445250 (+)