XLOC_000288


Basic Information

Item Value
gene id XLOC_000288
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24118367 ~ 24119067 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002830
ccagcatcgagatggcaaaccacctttttccagtggagcacgaTGGCCTCAGATTTGGAGGTGCTGAGTCTCATCCCAGCATGCCactaacatgcattttattatatgagCAACAGGCTCAtataattaggttcagaagtttcatttaatAGATAATGACAGTGCTATTAGCTAGgacataaaataacttttttttttttttcccaaaaatgtcactttagacaattatttgtttttttaacaaggtagatatactaaatatacaaaaaacaactaaatatacTAAATCCTCCAGTGCTtcttttgcaaaaacctctaaatacaCCTATTGGAACAAGACAGTGTGATTAGCTGAAAAaccactaaagatgcaattagaaattattttaccaaacataaaacacattacacaaaccacctaaaattaaaaatacataaatctgcCAAGTAAGTAGtgattcattctgttgtggtaatCCTTGATAAACCAGCAACaaagcagaaagaaaatgaatgaatgaaatttgtcaagtaaatgcattaagcaacaacataaaataaaaagacattaattaaatgttaacaTTCTGTTGCCATTTCTTATATttaggatttagatttaatgtaagtagaataatgtaaacattgcaaacattgtaaactaagcttgttaGATTCCAATAATGTAgtttaaaaacatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002830 True 701 lncRNA 0.30 1 24118367 24119067

Neighbor

gene id symbol gene type direction distance location
XLOC_000287 BX119984.1 coding upstream 3809 24114525 ~ 24114558 (+)
XLOC_000286 mab21l2 coding upstream 40268 24076243 ~ 24078099 (+)
XLOC_000284 slit2 coding upstream 205579 23783349 ~ 23912788 (+)
XLOC_000285 dre-mir-218a-2 coding upstream 251402 23866878 ~ 23866965 (+)
XLOC_000283 CT573447.1 coding upstream 367154 23751099 ~ 23751213 (+)
XLOC_000289 NA coding downstream 7313 24126380 ~ 24144170 (+)
XLOC_000290 NA coding downstream 217913 24336980 ~ 24343734 (+)
XLOC_000291 rps3a coding downstream 236448 24355515 ~ 24359653 (+)
XLOC_000292 NA coding downstream 242926 24361993 ~ 24363690 (+)
XLOC_000293 pimr178 coding downstream 246515 24365582 ~ 24367412 (+)
XLOC_000281 NA non-coding upstream 611849 23489111 ~ 23506518 (+)
XLOC_000270 CR376846.1 non-coding upstream 1597041 22521212 ~ 22521326 (+)
XLOC_000297 NA non-coding downstream 343393 24462460 ~ 24463305 (+)
XLOC_000300 NA non-coding downstream 477259 24596326 ~ 24599988 (+)

Expression


Co-expression Network