RNA id: TCONS_00000490


Basic Information

Item Value
RNA id TCONS_00000490
length 478
RNA type processed_transcript
GC content 0.44
exon number 5
gene id XLOC_000295
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24382651 ~ 24385979 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATGTTATCGTTTGGCATTCTCCTTACCTGTAAGTCACATGCTTCAAACTCAGTTACAGTTCTGCACAAATTTACTTTAACACTAATTAAACATGCCAACACTAATTGAGTCCTTAGGATTTGTTTGAGACAtgcagtAATGGTTCTGAATTCCAGTCTGGCCTTCAGCGAAGTAAAGAAAGTGATTGTTTATGGGGGAAATGGAGCACTGGGTTCAGAGAGTGTGCGCTACTTCAGAGCCAAAAACTGGTGGGTTGCCTCTATTGCTCATAGCATTAACGCAGAAGCCAGTGCAAATGTTAAAGTTAAGATGACTGAATCCTTCACTGAGCAAGCCAAACAGGTAACAGTGGGTGTTGGTAAGCTGTTGGGTGATGAGAAAGTTGATGCCATCTACTGCGTGGCTGGAGGTCAAGCAGAGGGCAATGCCAAAGCCAACTctctgTACAAGTATGCTGATCTGATGTGGAAGGAGA

Function

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004155 6,7-dihydropteridine reductase activity molecular_function
GO:0070402 NADPH binding molecular_function
GO:0070404 NADH binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070720-19 Predicted to enable 6,7-dihydropteridine reductase activity; NADH binding activity; and NADPH binding activity. Predicted to be involved in L-phenylalanine catabolic process and tetrahydrobiopterin biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in phenylketonuria. Orthologous to human QDPR (quinoid dihydropteridine reductase).

Ensembl:

ensembl_id ENSDART00000147363

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002831 lncRNA upstream 19277 24361993 ~ 24363690 (+) True XLOC_000292
TCONS_00000484 lncRNA upstream 25006 24355523 ~ 24357961 (+) False XLOC_000291
TCONS_00000485 lncRNA upstream 26095 24355542 ~ 24356872 (+) True XLOC_000291
TCONS_00000481 lncRNA upstream 39233 24337062 ~ 24343734 (+) False XLOC_000290
TCONS_00000482 lncRNA upstream 39777 24338392 ~ 24343190 (+) True XLOC_000290
TCONS_00003071 lncRNA downstream 77763 24462460 ~ 24463305 (+) True XLOC_000297
TCONS_00002833 lncRNA downstream 211629 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002832 lncRNA downstream 211629 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002834 lncRNA downstream 212196 24596893 ~ 24599988 (+) False XLOC_000300
TCONS_00002835 lncRNA downstream 212979 24597676 ~ 24599665 (+) True XLOC_000300
TCONS_00000488 mRNA upstream 2434 24376394 ~ 24380533 (+) True XLOC_000294
TCONS_00000486 mRNA upstream 15555 24365582 ~ 24367412 (+) False XLOC_000293
TCONS_00000487 mRNA upstream 15911 24366110 ~ 24367056 (+) True XLOC_000293
TCONS_00000483 mRNA upstream 23314 24355515 ~ 24359653 (+) False XLOC_000291
TCONS_00000479 mRNA upstream 304868 24076243 ~ 24078099 (+) True XLOC_000286
TCONS_00000491 mRNA downstream 2962 24387659 ~ 24391673 (+) True XLOC_000296
TCONS_00000492 mRNA downstream 84616 24469313 ~ 24511625 (+) False XLOC_000298
TCONS_00000493 mRNA downstream 97709 24482406 ~ 24514673 (+) True XLOC_000298
TCONS_00000494 mRNA downstream 172717 24557414 ~ 24558749 (+) True XLOC_000299
TCONS_00000496 mRNA downstream 793409 25178106 ~ 25214764 (+) False XLOC_000302
TCONS_00000480 other upstream 268409 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 516002 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 631754 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000467 other upstream 877864 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000457 other upstream 1103265 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000495 other downstream 735392 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000518 other downstream 1726688 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 3328652 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 3592673 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 3599696 27984393 ~ 27995611 (+) True XLOC_000332

Expression Profile

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