RNA id: TCONS_00003071


Basic Information

Item Value
RNA id TCONS_00003071
length 846
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id XLOC_000297
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24462460 ~ 24463305 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTCCTACCTGTTGAATCTCTTCTCCTCGTAacagaaacatttgaaaaatcttcaCTTCCATCACTACAACGGGCTTCAGCCATGAGGTATAACCGCACGTCTTTCTAAtaatatttagacttttttaACTTAAGGAAAAAAGCTATTTGAAAGATTTTAAAACAAAGTCTGGCGGTGTGTTTTGTTTCAGCAAAAAGCCAGGAAGACTGTTAAACAGTCAAAGACTGATGAACGAAACCCTGCGGTTGGCGCGAGCATCATGACAAACAGAAGGGCGAGAGAGAGATCTGTGCACGCGCGTCTTTTACTGCTCAGCAGAGGGCGGAGAAGATTACATTGATTTTAAACCTTTCTGTGAAACATTAGACTACACAAAGAAATacgtaaagaaaaaaaagttgtgatCCTTAGCTATTCAGAAGTGTCATTAAACAAGAAGTGAGTCCAGGCCAAACgaacatttgttttataatttgagCAGCCTGGAgagtcaaattaaaataaacaacaacagttAACAATTATTCTTTTTAGCCATATTATTtatgcaaactatttatttcagtattttatttttattttgatgtcaaCCCCAATTATATGAAATGTTGTATCCAAAATATCCATTTCATCAATTCACTGTTTCATTTACATTCTATCAGTTTTAAAATGAAGCATGCATAATATTCTGATTGTGAACAACTGCATGATTTCAAaaggttcattttattttaatgaattggcataatatgcatctatgtttttaaaatttattataaaacGATCAGAATTTAGGTCATTGCTAGAATATgtgctaaaataataaatgtagtaTCACTCTTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002831 lncRNA upstream 98770 24361993 ~ 24363690 (+) True XLOC_000292
TCONS_00000484 lncRNA upstream 104499 24355523 ~ 24357961 (+) False XLOC_000291
TCONS_00000485 lncRNA upstream 105588 24355542 ~ 24356872 (+) True XLOC_000291
TCONS_00000481 lncRNA upstream 118726 24337062 ~ 24343734 (+) False XLOC_000290
TCONS_00000482 lncRNA upstream 119270 24338392 ~ 24343190 (+) True XLOC_000290
TCONS_00002833 lncRNA downstream 133021 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002832 lncRNA downstream 133021 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002834 lncRNA downstream 133588 24596893 ~ 24599988 (+) False XLOC_000300
TCONS_00002835 lncRNA downstream 134371 24597676 ~ 24599665 (+) True XLOC_000300
TCONS_00000499 lncRNA downstream 754966 25218271 ~ 25256001 (+) False XLOC_000303
TCONS_00000491 mRNA upstream 70787 24387659 ~ 24391673 (+) True XLOC_000296
TCONS_00000489 mRNA upstream 76481 24382651 ~ 24385979 (+) False XLOC_000295
TCONS_00000488 mRNA upstream 81927 24376394 ~ 24380533 (+) True XLOC_000294
TCONS_00000486 mRNA upstream 95048 24365582 ~ 24367412 (+) False XLOC_000293
TCONS_00000487 mRNA upstream 95404 24366110 ~ 24367056 (+) True XLOC_000293
TCONS_00000492 mRNA downstream 6008 24469313 ~ 24511625 (+) False XLOC_000298
TCONS_00000493 mRNA downstream 19101 24482406 ~ 24514673 (+) True XLOC_000298
TCONS_00000494 mRNA downstream 94109 24557414 ~ 24558749 (+) True XLOC_000299
TCONS_00000496 mRNA downstream 714801 25178106 ~ 25214764 (+) False XLOC_000302
TCONS_00000497 mRNA downstream 714807 25178112 ~ 25216235 (+) True XLOC_000302
TCONS_00000490 other upstream 77763 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 347902 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 595495 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 711247 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000467 other upstream 957357 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000495 other downstream 656784 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000518 other downstream 1648080 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 3250044 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 3514065 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 3521088 27984393 ~ 27995611 (+) True XLOC_000332

Expression Profile

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