Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000485 |
| length | 839 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 2 |
| gene id | XLOC_000291 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 24355515 ~ 24359653 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005840 | ribosome | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-9184 | Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytosol. Is expressed in lens. Orthologous to human RPS3A (ribosomal protein S3A). |
| ensembl_id | ENSDART00000143428 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000481 | lncRNA | upstream | 11808 | 24337062 ~ 24343734 (+) | False | XLOC_000290 |
| TCONS_00000482 | lncRNA | upstream | 12352 | 24338392 ~ 24343190 (+) | True | XLOC_000290 |
| TCONS_00003070 | lncRNA | upstream | 17750 | 24336980 ~ 24337792 (+) | False | XLOC_000290 |
| TCONS_00003069 | lncRNA | upstream | 211372 | 24126380 ~ 24144170 (+) | True | XLOC_000289 |
| TCONS_00002830 | lncRNA | upstream | 236475 | 24118367 ~ 24119067 (+) | True | XLOC_000288 |
| TCONS_00002831 | lncRNA | downstream | 5121 | 24361993 ~ 24363690 (+) | True | XLOC_000292 |
| TCONS_00003071 | lncRNA | downstream | 105588 | 24462460 ~ 24463305 (+) | True | XLOC_000297 |
| TCONS_00002833 | lncRNA | downstream | 239454 | 24596326 ~ 24599988 (+) | False | XLOC_000300 |
| TCONS_00002832 | lncRNA | downstream | 239454 | 24596326 ~ 24599988 (+) | False | XLOC_000300 |
| TCONS_00002834 | lncRNA | downstream | 240021 | 24596893 ~ 24599988 (+) | False | XLOC_000300 |
| TCONS_00000479 | mRNA | upstream | 277443 | 24076243 ~ 24078099 (+) | True | XLOC_000286 |
| TCONS_00000477 | mRNA | upstream | 442754 | 23784905 ~ 23912788 (+) | False | XLOC_000284 |
| TCONS_00000486 | mRNA | downstream | 8710 | 24365582 ~ 24367412 (+) | False | XLOC_000293 |
| TCONS_00000487 | mRNA | downstream | 9238 | 24366110 ~ 24367056 (+) | True | XLOC_000293 |
| TCONS_00000488 | mRNA | downstream | 19522 | 24376394 ~ 24380533 (+) | True | XLOC_000294 |
| TCONS_00000489 | mRNA | downstream | 25779 | 24382651 ~ 24385979 (+) | False | XLOC_000295 |
| TCONS_00000491 | mRNA | downstream | 30787 | 24387659 ~ 24391673 (+) | True | XLOC_000296 |
| TCONS_00000480 | other | upstream | 240984 | 24114525 ~ 24114558 (+) | True | XLOC_000287 |
| TCONS_00000478 | other | upstream | 488577 | 23866878 ~ 23866965 (+) | True | XLOC_000285 |
| TCONS_00000472 | other | upstream | 604329 | 23751099 ~ 23751213 (+) | True | XLOC_000283 |
| TCONS_00000467 | other | upstream | 850439 | 23504334 ~ 23505103 (+) | False | XLOC_000281 |
| TCONS_00000457 | other | upstream | 1075840 | 23274922 ~ 23279702 (+) | True | XLOC_000276 |
| TCONS_00000490 | other | downstream | 26095 | 24382967 ~ 24384697 (+) | True | XLOC_000295 |
| TCONS_00000495 | other | downstream | 763217 | 25120089 ~ 25120205 (+) | True | XLOC_000301 |
| TCONS_00000518 | other | downstream | 1754513 | 26111385 ~ 26119624 (+) | True | XLOC_000317 |
| TCONS_00000557 | other | downstream | 3356477 | 27713349 ~ 27730980 (+) | False | XLOC_000329 |
| TCONS_00000565 | other | downstream | 3620498 | 27977370 ~ 28001937 (+) | False | XLOC_000332 |
