RNA id: TCONS_00000486



Basic Information


Item Value
RNA id TCONS_00000486
length 855
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_000293
representative False

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24365582 ~ 24367412 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATCTTCAGCCAATATGTGCTTGGTAAAAAACTGGGAGCAGGTGGATTCGGTGTCGTGTATGAAGCAAGGCGTTTGGTGGACAATCTCCAAGTGGCAGTTAAATACGTCAACAAGAAAGGCGACGACTGGGAACTATGGGATGATCAACACAGCAGAATGCTTCCATTGGAGATCGTCCTCACATTGATGGCAAATAAAGGGTGCAAAGAGCCAGGGATCATCCAACTGCTGGACTGGAAGGTTTACCGGGATCATTTCATCATGATCTTCGAGTATCCTTCTCCATGTCAGGATTTGGAGGTTTTTATGAGGAATCAAGGTGGCAAAGTCAGTGAGAGTTTCGCAAGGCAAGTCATGACGCAGATTATTCAGGCTGCGCTCGTGTGCTGCCAGCGTGGTGTCTTTCACCGGGATATCAAACTCTCCAACCTTCTCATCAACACCGAGACATTTCAAGTCAAACTAATTGACTTTGGCTGCGGAGCCATTTTGAAGAAATCTTACTACAGGACCTTCAGTGGGACATTTTTGTACATTCCTCCTGAGTACATTTTTGAAGGGAAATACCATGCCAATCCTGCGACAGCATGGTCTCTGGGGATATTGCTATTCAGATTGGTGTGCGGAAGATATCCATTTTTCTTACCTCTGCTGTGGATCAGATGGAAAATCTGGTGCAGATGTGACCTGTCAAACGAACTAATCCATCTTCTCCATGATCTCCTTGAGATAAACCCAGACAAACGGATTCATCTGGAGGACATTCTTCAACACAGCTGGTTTAAGGTACTGAACACAACAGCATCTCAACATAATTTTAGACGTCCGTTGTGTTCttctacattaaatgtttaa

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169389

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00002831 lncRNA upstream 1892 24361993 ~ 24363690 (+) True XLOC_000292
TCONS_00000484 lncRNA upstream 7621 24355523 ~ 24357961 (+) False XLOC_000291
TCONS_00000485 lncRNA upstream 8710 24355542 ~ 24356872 (+) True XLOC_000291
TCONS_00000481 lncRNA upstream 21848 24337062 ~ 24343734 (+) False XLOC_000290
TCONS_00000482 lncRNA upstream 22392 24338392 ~ 24343190 (+) True XLOC_000290
TCONS_00003071 lncRNA downstream 95048 24462460 ~ 24463305 (+) True XLOC_000297
TCONS_00002833 lncRNA downstream 228914 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002832 lncRNA downstream 228914 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002834 lncRNA downstream 229481 24596893 ~ 24599988 (+) False XLOC_000300
TCONS_00002835 lncRNA downstream 230264 24597676 ~ 24599665 (+) True XLOC_000300
TCONS_00000483 mRNA upstream 5929 24355515 ~ 24359653 (+) False XLOC_000291
TCONS_00000479 mRNA upstream 287483 24076243 ~ 24078099 (+) True XLOC_000286
TCONS_00000477 mRNA upstream 452794 23784905 ~ 23912788 (+) False XLOC_000284
TCONS_00000488 mRNA downstream 8982 24376394 ~ 24380533 (+) True XLOC_000294
TCONS_00000489 mRNA downstream 15239 24382651 ~ 24385979 (+) False XLOC_000295
TCONS_00000491 mRNA downstream 20247 24387659 ~ 24391673 (+) True XLOC_000296
TCONS_00000492 mRNA downstream 101901 24469313 ~ 24511625 (+) False XLOC_000298
TCONS_00000493 mRNA downstream 114994 24482406 ~ 24514673 (+) True XLOC_000298
TCONS_00000480 other upstream 251024 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 498617 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 614369 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000467 other upstream 860479 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000457 other upstream 1085880 23274922 ~ 23279702 (+) True XLOC_000276
TCONS_00000490 other downstream 15555 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000495 other downstream 752677 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000518 other downstream 1743973 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 3345937 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 3609958 27977370 ~ 28001937 (+) False XLOC_000332

Expression Profile


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