RNA id: TCONS_00002834


Basic Information

Item Value
RNA id TCONS_00002834
length 810
lncRNA type inter_gene
GC content 0.31
exon number 4
gene id XLOC_000300
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24596326 ~ 24599988 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cggttttccacaaggtaagtaaaaaatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatctagtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggaaccctccaggaattgctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003071 lncRNA upstream 133588 24462460 ~ 24463305 (+) True XLOC_000297
TCONS_00002831 lncRNA upstream 233203 24361993 ~ 24363690 (+) True XLOC_000292
TCONS_00000484 lncRNA upstream 238932 24355523 ~ 24357961 (+) False XLOC_000291
TCONS_00000485 lncRNA upstream 240021 24355542 ~ 24356872 (+) True XLOC_000291
TCONS_00000482 lncRNA upstream 253703 24338392 ~ 24343190 (+) True XLOC_000290
TCONS_00000499 lncRNA downstream 618283 25218271 ~ 25256001 (+) False XLOC_000303
TCONS_00000500 lncRNA downstream 619139 25219127 ~ 25267709 (+) True XLOC_000303
TCONS_00003072 lncRNA downstream 840049 25440037 ~ 25442701 (+) True XLOC_000304
TCONS_00003073 lncRNA downstream 950065 25550053 ~ 25553145 (+) False XLOC_000305
TCONS_00002836 lncRNA downstream 950624 25550612 ~ 25553299 (+) False XLOC_000305
TCONS_00000494 mRNA upstream 38144 24557414 ~ 24558749 (+) True XLOC_000299
TCONS_00000493 mRNA upstream 82220 24482406 ~ 24514673 (+) True XLOC_000298
TCONS_00000492 mRNA upstream 85268 24469313 ~ 24511625 (+) False XLOC_000298
TCONS_00000491 mRNA upstream 205220 24387659 ~ 24391673 (+) True XLOC_000296
TCONS_00000489 mRNA upstream 210914 24382651 ~ 24385979 (+) False XLOC_000295
TCONS_00000496 mRNA downstream 578118 25178106 ~ 25214764 (+) False XLOC_000302
TCONS_00000497 mRNA downstream 578124 25178112 ~ 25216235 (+) True XLOC_000302
TCONS_00000498 mRNA downstream 618189 25218177 ~ 25316149 (+) False XLOC_000303
TCONS_00000501 mRNA downstream 1050929 25650917 ~ 25666604 (+) True XLOC_000306
TCONS_00000502 mRNA downstream 1096810 25696798 ~ 25698039 (+) True XLOC_000307
TCONS_00000490 other upstream 212196 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 482335 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 729928 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 845680 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000467 other upstream 1091790 23504334 ~ 23505103 (+) False XLOC_000281
TCONS_00000495 other downstream 520101 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000518 other downstream 1511397 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 3113361 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 3377382 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 3384405 27984393 ~ 27995611 (+) True XLOC_000332