RNA id: TCONS_00000499


Basic Information

Item Value
RNA id TCONS_00000499
length 809
lncRNA type retained_intron
GC content 0.38
exon number 4
gene id XLOC_000303
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25218177 ~ 25316149 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaagaagtgAAGCCAGGGAGCTCAACACAGCCAGCATGGCGAGCCAAAGGGACTtcacacacagaaaaacatgGATTAATGTTCTCCTGCGACTCTTACAGCTCTTATTGCTTTACATTCAGCACGGAGGAGCTCAGTTTCAAGCTCTGACTCAGATGTCCAGCGTGGTCGAAGTTTGGCAGGCTGAGGACGCAGACTTCTTCGTGCCATCTCAGgcaGAGGAGCAACACAGTGAAAATGTTCGAGAGGAGagCTCCTCGTTTTATGTGCAGGAGAGTGGGAGACAGCTCCTGTTTCAGCCGCCCACACTGGATTTTGGACCAcagtaagagttttttttttttttacatttttatacatttatatccTCAACTACCATAAAAAAACGATTCATTGGAATTGCAAGCAAGTTATGTgttaaattcaaacaaacaaattcaatgtagtaatgttcaactttgtttgaattcagctcaTGTATGGTGGGAGAAATTAGTATTTAACACGCCaaaatttttctcagaaaacatatttctagacTTAAAATTTTTACCAGATATTgacaacaaccaaagaaatccatatatgtgaagaaaacaatattaattagtttacaaatgaagttatgtgtcaTAAAATGAAATGAgacaggaaaaaaatattgaacacattaaGAAAAAGAGGTGTTGAGAggaagctgaaatctctcagaagttaTTTAGCAAGcgtctgcccttcatcattgtaaattagtatcagctgctttagtccaaGGTCTACATTGTCAGAATGATgtagatgaaaccag

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6110 Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM131L (transmembrane 131 like).

Ensembl:

ensembl_id ENSDART00000144340

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002833 lncRNA upstream 618283 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002832 lncRNA upstream 618283 24596326 ~ 24599988 (+) False XLOC_000300
TCONS_00002834 lncRNA upstream 618283 24596893 ~ 24599988 (+) False XLOC_000300
TCONS_00002835 lncRNA upstream 618606 24597676 ~ 24599665 (+) True XLOC_000300
TCONS_00003071 lncRNA upstream 754966 24462460 ~ 24463305 (+) True XLOC_000297
TCONS_00003072 lncRNA downstream 184036 25440037 ~ 25442701 (+) True XLOC_000304
TCONS_00003073 lncRNA downstream 294052 25550053 ~ 25553145 (+) False XLOC_000305
TCONS_00002836 lncRNA downstream 294611 25550612 ~ 25553299 (+) False XLOC_000305
TCONS_00002838 lncRNA downstream 295150 25551151 ~ 25553299 (+) False XLOC_000305
TCONS_00002837 lncRNA downstream 295150 25551151 ~ 25553299 (+) True XLOC_000305
TCONS_00000497 mRNA upstream 2036 25178112 ~ 25216235 (+) True XLOC_000302
TCONS_00000496 mRNA upstream 3507 25178106 ~ 25214764 (+) False XLOC_000302
TCONS_00000494 mRNA upstream 659522 24557414 ~ 24558749 (+) True XLOC_000299
TCONS_00000493 mRNA upstream 703598 24482406 ~ 24514673 (+) True XLOC_000298
TCONS_00000492 mRNA upstream 706646 24469313 ~ 24511625 (+) False XLOC_000298
TCONS_00000501 mRNA downstream 394916 25650917 ~ 25666604 (+) True XLOC_000306
TCONS_00000502 mRNA downstream 440797 25696798 ~ 25698039 (+) True XLOC_000307
TCONS_00000504 mRNA downstream 476714 25732715 ~ 25733867 (+) True XLOC_000309
TCONS_00000506 mRNA downstream 527800 25783801 ~ 25799051 (+) True XLOC_000310
TCONS_00000507 mRNA downstream 545647 25801648 ~ 25841659 (+) False XLOC_000311
TCONS_00000495 other upstream 98066 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 833574 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 1103713 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 1351306 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 1467058 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000518 other downstream 855384 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 2457348 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 2721369 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 2728392 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 3812661 29068662 ~ 29080336 (+) False XLOC_000337

Expression Profile

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