RNA id: TCONS_00000504


Basic Information

Item Value
RNA id TCONS_00000504
length 1153
RNA type mRNA
GC content 0.44
exon number 1
gene id XLOC_000309
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25732715 ~ 25733867 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGAATACAAAAATGGATGTAAGAACCCAAATAAACACATCTGAAGATGGAACCCTGAGCCAGCTAAATCAGTCCACAAACTGTTGTGCACCAGACACTGCTGAAGTTGATGCAGCCTTACTGGATGGTCTGGAAGACAGTACAAAACTGGTGGGTGTTCAAGTGATCTTGATTTTGGCTTACAGCACCATCATTTTTTTTGGCATGACCGGGAACTCCTTGGTCATATATGTCGTATACAAGTTTCGCAATTTACACACGGTGACTAACTATTTCATTGTCAACTTGGCTGTAGCAGACTTGCTGGTAAACACATTGTGTTTACCTTTTACTTTGATGTACACACTCTATGGAGAGTGGAAATTTGGACAGGTGATGTGTTACCTATTGCCGTACGCACAAGGCTTAGCAGTCCACGTTTCAACCATCACACTTAACGTTATAGCACTGGACAGATACCGTAGCATCGTCTACCACATGGAAACCAAGATGTCTAAAGACATGTGCGTAGTTGTCATCGCCATCACTTGGGTGGCAAGCGCGATCCTCGCTAGCCCTCTTGCTATTTTCCGTGAATATGTGACCTTTGACCTTTCACCTGAGCAGACGATTCAAGGTTGCGCAGAAAAGTGGCCTGGAAGTAGCACAGATGGAACCATCTACAGCATCGCCATGTTTTTTCTACAATATGGCCTGCCGTTGTCCATCATTTCATTTGCATACACTCGGATTTGGAACAAGCTAAGAAATCATGTCAGCCCCGGCGGTGGCCGCAGCGACCGCCATCAACGAAgacagaaaacaacaaaaatgcttgTAGCTGTAGTGGTGGTCTTCACCGTTAGCTGGCTGCCATTTCACGCCTTCCAGCTTGCTGTGGACATCGACAGCAGTGTATTAGAAATAAGAGACTTCAAATTGCTCTATACAGCTTTCCATATTGTTGCCATGTGCTCCACTTTTGCAAATCCTATCCTCTATGGTTGGATGAATAGGAACTACAGAGGATCTTTTGTTGCTGTGTTCAAGTGTGGAAGGATAAATAATGGAATGAGAAGGGTTAGCAGCAGTGAGGCAGTAAGGGAAAAATGTACACGTAATTTGGAAAACACAATCAGTATTGCTCTTACACAAGCAAACACACTTGTGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004983 neuropeptide Y receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-040924-8 Enables neuropeptide binding activity. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; eye; heart; immune system; and muscle. Human ortholog(s) of this gene implicated in Huntington's disease; morbid obesity; and obesity. Orthologous to human NPY2R (neuropeptide Y receptor Y2).

Ensembl:

ensembl_id ENSDART00000140172

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003074 lncRNA upstream 11013 25719653 ~ 25721702 (+) False XLOC_000308
TCONS_00000503 lncRNA upstream 11013 25719653 ~ 25721702 (+) True XLOC_000308
TCONS_00002836 lncRNA upstream 179416 25550612 ~ 25553299 (+) False XLOC_000305
TCONS_00002838 lncRNA upstream 179416 25551151 ~ 25553299 (+) False XLOC_000305
TCONS_00002837 lncRNA upstream 179416 25551151 ~ 25553299 (+) True XLOC_000305
TCONS_00000505 lncRNA downstream 49934 25783801 ~ 25792713 (+) False XLOC_000310
TCONS_00000508 lncRNA downstream 70775 25804642 ~ 25812959 (+) True XLOC_000311
TCONS_00000510 lncRNA downstream 114748 25848615 ~ 25849235 (+) True XLOC_000312
TCONS_00000514 lncRNA downstream 365426 26099293 ~ 26101025 (+) True XLOC_000315
TCONS_00000525 lncRNA downstream 733204 26467071 ~ 26473854 (+) False XLOC_000321
TCONS_00000502 mRNA upstream 34676 25696798 ~ 25698039 (+) True XLOC_000307
TCONS_00000501 mRNA upstream 66111 25650917 ~ 25666604 (+) True XLOC_000306
TCONS_00000498 mRNA upstream 416566 25218177 ~ 25316149 (+) False XLOC_000303
TCONS_00000497 mRNA upstream 516480 25178112 ~ 25216235 (+) True XLOC_000302
TCONS_00000496 mRNA upstream 517951 25178106 ~ 25214764 (+) False XLOC_000302
TCONS_00000506 mRNA downstream 49934 25783801 ~ 25799051 (+) True XLOC_000310
TCONS_00000507 mRNA downstream 67781 25801648 ~ 25841659 (+) False XLOC_000311
TCONS_00000509 mRNA downstream 114364 25848231 ~ 25851575 (+) False XLOC_000312
TCONS_00000511 mRNA downstream 278801 26012668 ~ 26045715 (+) True XLOC_000313
TCONS_00000512 mRNA downstream 338002 26071869 ~ 26096572 (+) True XLOC_000314
TCONS_00000495 other upstream 612510 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 1348018 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 1618157 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 1865750 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 1981502 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000518 other downstream 377518 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 1979482 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 2243503 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 2250526 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 3334795 29068662 ~ 29080336 (+) False XLOC_000337

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_10401994_10404248.mRNA True 2098 mRNA 0.40 3 CI01000300 10401565 ~ 10404675 (+)