RNA id: TCONS_00000502


Basic Information

Item Value
RNA id TCONS_00000502
length 1160
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_000307
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25696798 ~ 25698039 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGTCTTCACTTACACAAAACACTAAAATGCTGGACTCGCTGACTTTTCTATTTGAGAAATTCTTTCTTTTCTCAAACTTTAACCTATTTAAAAGTATATGGCAGCCAGAGAAGGAGGAGTGTGCTGTGAAATGTCACCCAGCGCTCAGGAGAGGAGATCTGCTGGAGGTGCAGCGCACTCTCTTCATTCATTACGGCATTTATCTAGGCGAGAACAGAGTGGCTCACCTAATGCCCGACATCATGCCCCTGTTAACCAGCAACAAACAGCACATTAAACCAGTCGTCACGAACAAAAGACTCATTTTAGGCTGCATGTACAGACTCGCGAGTATACGCGTCGATTCGGTTGAAGATTTCGCGTACGGAGCTCCGATTCTGACCAACGACATGGACAAGAAAATGAAGTGTCAAGTACTGGCGAACGAGGAGGTCGCGAGGAGAGCAGAGAAACTGGTCGGCGACATACCGTACAGTTTATTGTGGAATAACTGCGAACATTTCGTGACGTACTGCAGGTACGGAACACCTGTGAGCGAGCAGACCGACAAGTTTTGTAATTGTCTGAAATCCATCATTCGGGACCAGAGAAGTGTGGCCTTAACTATCGGGATGGGAGTGATGTACATCCTTTGCTTTGGCTTGGCACCTtcaactacattacccacaattcTTATTCCCTTTATTTTGTGGATGGCTGGTTGAAAGACAACACTTTGAGTGGACAAACACTCAACaatgtgtctttcaaatgcatcGGTCCAACGGCTAAATTTCTGTAGCCTACACACGCTGTTTGAATATAGCCAAGCTATGATTGTACATGCATTCTGCCTGTATATTTGTTAAGCTCTTTCATTGAAACAATTAATGAAAACATTCTATTAACTCAAATTTGAGCCTTTACAggatgcttttaattttttaaaaccatattgTAGCTTGAAGTTACAGATTCCATGTACTACTCACTACATGTGCCTAATGTGTGTATTAAGCTGAAGTGTTAAACAGACGTGATGAATTTCACTGATCAAACTCATTGCATCATGAACTTtaatcatgcagaatatgtataATTGTaaatctttgtatttttattgttatggCCTGTTTGATTGTGATTTTGTAcagttgaaatatatatttaatacagtaA

Function

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060720-1 Predicted to enable phosphatidylcholine-retinol O-acyltransferase activity. Predicted to act upstream of or within retinol metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; liver; pleuroperitoneal region; and visual system. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 14 and retinitis pigmentosa. Orthologous to human LRAT (lecithin retinol acyltransferase).

Ensembl:

ensembl_id ENSDART00000054228

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002836 lncRNA upstream 143499 25550612 ~ 25553299 (+) False XLOC_000305
TCONS_00002838 lncRNA upstream 143499 25551151 ~ 25553299 (+) False XLOC_000305
TCONS_00002837 lncRNA upstream 143499 25551151 ~ 25553299 (+) True XLOC_000305
TCONS_00003073 lncRNA upstream 143653 25550053 ~ 25553145 (+) False XLOC_000305
TCONS_00003072 lncRNA upstream 254097 25440037 ~ 25442701 (+) True XLOC_000304
TCONS_00003074 lncRNA downstream 21614 25719653 ~ 25721702 (+) False XLOC_000308
TCONS_00000503 lncRNA downstream 21614 25719653 ~ 25721702 (+) True XLOC_000308
TCONS_00000505 lncRNA downstream 85762 25783801 ~ 25792713 (+) False XLOC_000310
TCONS_00000508 lncRNA downstream 106603 25804642 ~ 25812959 (+) True XLOC_000311
TCONS_00000510 lncRNA downstream 150576 25848615 ~ 25849235 (+) True XLOC_000312
TCONS_00000501 mRNA upstream 30194 25650917 ~ 25666604 (+) True XLOC_000306
TCONS_00000498 mRNA upstream 380649 25218177 ~ 25316149 (+) False XLOC_000303
TCONS_00000497 mRNA upstream 480563 25178112 ~ 25216235 (+) True XLOC_000302
TCONS_00000496 mRNA upstream 482034 25178106 ~ 25214764 (+) False XLOC_000302
TCONS_00000494 mRNA upstream 1138049 24557414 ~ 24558749 (+) True XLOC_000299
TCONS_00000504 mRNA downstream 34676 25732715 ~ 25733867 (+) True XLOC_000309
TCONS_00000506 mRNA downstream 85762 25783801 ~ 25799051 (+) True XLOC_000310
TCONS_00000507 mRNA downstream 103609 25801648 ~ 25841659 (+) False XLOC_000311
TCONS_00000509 mRNA downstream 150192 25848231 ~ 25851575 (+) False XLOC_000312
TCONS_00000511 mRNA downstream 314629 26012668 ~ 26045715 (+) True XLOC_000313
TCONS_00000495 other upstream 576593 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 1312101 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 1582240 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000478 other upstream 1829833 23866878 ~ 23866965 (+) True XLOC_000285
TCONS_00000472 other upstream 1945585 23751099 ~ 23751213 (+) True XLOC_000283
TCONS_00000518 other downstream 413346 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000557 other downstream 2015310 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000565 other downstream 2279331 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 2286354 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 3370623 29068662 ~ 29080336 (+) False XLOC_000337

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_10387736_10392987.mRNA True 1371 mRNA 0.38 3 CI01000300 10387176 ~ 10393042 (+)